| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1413 |
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| Symbol | |
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| ID | 3933860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1382287 |
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| End bp | 1383600 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637903763 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_509355 |
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| Protein GI | 89053904 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.673983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0378644 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAG TCTATGCCAT TATCCTGTTT CTGTTCGTTC TTTTCTTCCT TCTGGGCACG
GGTGTCTGGG TTGGTGTGGC GCTTATGGGC GTGGCCTGGG TGGGGATGGA ATTGTTCACC
ACGCGGCCCG TGGGCGACAC AATGGTCACG ACCATTTGGG CCACGTCATC GTCCTGGACA
CTGACGGCCC TGCCGCTGTT CATCTGGATG GGAGAGATCC TGTACCGTAC CCGTCTGTCC
GAGGATATGT TTCGCGGCCT CTCCCCGTGG CTCGCGCGTC TTCCCGGTGG CCTTGTGCAC
ACGAATATCG TTGGTTGTAC GGTTTTTGCC GCCGTGTCCG GATCTTCCGC CGCGACGCTG
ACAACGGTCG GCAAGATGTC GATCCCCGAG CTTCGGGCGC GCAAGTACCC CGAACATATC
GTCATCGGTA CGCTTGCGGG CGCGGCGACC CTTGGCCTGA TGATCCCGCC GTCGCTCGCG
CTGATCGTCT ATGGCGTCGC CGTGAACCAA TCCATCACCG AATTGTTCTT CGCAGGCGTC
TTCCCGGGCC TCGTCCTGGC CCTGATGTTC ATGGGTTACG TCGCGGCTTA TTCCGTGATT
TCAAAGGGCT GGCAGCCGAC GTTAGAGACG GCCATGAGCT TTGGGGAGAA GCTGCGCAAC
TCCCGTTTCC TGATCCCCGT GATCCTGCTG ATCATGGTCG TCATCGGCTC CATGTACACC
GGGACAGCCA CCGCAACAGA AGCGGCAGCC ATTGGTGTCA TCGGCTCACT CCTACTGGCG
GCATCTCAAG GTTCGCTCAA CTGGGGCAGT TTTCGCGAAA GCCTCATGGG GGCCACGCGC
ACGTCGGCCA TGATCATGCT GATCCTTGCG GGGGCTGCGT TCCTTAAGCT GTCCATGGGG
TTCACCGGTT TGCCGCGCGC GCTGGCAGAC GGGATTGGCG CGCTGGATCT GACGCGGTTC
GAATTGCTGA TGATGCTGCT GGTTTTCTAC ATCATCTTGG GCATGTTCCT TGATGGCATC
TCTTCGGTCG TACTGACCAT GGCAGTGGTG GAGCCGATGG TGGTGGAGGC CGGTATCGAC
CTGATATGGT TCGGAATATT CGTGATCGTC GTGGTGGAGA TGGCACAGAT TACACCCCCC
ATCGGCTTCA ACCTCTTCGT TTTGCAAGGC ATGACGGGGC ACGAGATGGG CTACATCGCC
AAGGCGGCTC TGCCGATGTT CATGATCATG GTCCTGATGT GCTTCGTCCT GATCTGGATC
CCGGATCTGG CGATGTGGCT GCCCGAGACG ATGCGGTCGA CGCCAGGGGG ATGA
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| Protein sequence | MTEVYAIILF LFVLFFLLGT GVWVGVALMG VAWVGMELFT TRPVGDTMVT TIWATSSSWT
LTALPLFIWM GEILYRTRLS EDMFRGLSPW LARLPGGLVH TNIVGCTVFA AVSGSSAATL
TTVGKMSIPE LRARKYPEHI VIGTLAGAAT LGLMIPPSLA LIVYGVAVNQ SITELFFAGV
FPGLVLALMF MGYVAAYSVI SKGWQPTLET AMSFGEKLRN SRFLIPVILL IMVVIGSMYT
GTATATEAAA IGVIGSLLLA ASQGSLNWGS FRESLMGATR TSAMIMLILA GAAFLKLSMG
FTGLPRALAD GIGALDLTRF ELLMMLLVFY IILGMFLDGI SSVVLTMAVV EPMVVEAGID
LIWFGIFVIV VVEMAQITPP IGFNLFVLQG MTGHEMGYIA KAALPMFMIM VLMCFVLIWI
PDLAMWLPET MRSTPGG
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