| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1399 |
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| Symbol | |
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| ID | 3933846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1369457 |
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| End bp | 1370218 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637903749 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_509341 |
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| Protein GI | 89053890 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00235361 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGTTGATG CCGGCGCGCT CTTTGATCTG CGCGGCCGGG TGGCTTGCGT CACCGGGGCC
TCCGCGGGTC TGGGGCAGCG CGCGGCTGAG GTCTTGGCGG ATGCCGGGGC GCGCGTCGTG
GGGGTGGCCC GCCGCGCCGA CGCCCTGGCC GAGTGGGTGG AGCGTATGGG CAAACCTGCG
GCAGCCGTGG CTGCTGACCT CTCGGACAGG GGCGCGATTC CGCAGATCGC CGAAGACATC
TGCGGCCCGT TTGGCGCGCC TGACATTGTA GTCCATGCTG CGGGCATCAA CACGCGCGAG
ACGGCGGATG ATGTGACTGG CGATGGTTGG GATGTCACAC TGAACCTGAA CCTCGCAGCG
CCCTTCTTTC TGACCCAGGC GCTGGTGCCT GCGATGAAGG CCCGGGGATG GGGCCGCGTG
GTGAGCTTCG CATCGCTGCA GACGAGCCGT GCCTTTCCCG GCGGCGTTGC CTACGGCGCG
TCCAAGGCTG GCATCGCGCA GCTGACCCGC GCCATGGCCG AGGCCTGGTC GCGCGACGGG
ATCAACGCCA ACGCAATCGG TCCGGGTTTT TTCCCGACCG AGCTGACCGG CCCTGTCTTC
GCCGACCCCG AGCGCGCAGC GCGCAACGCC GCGCAGACCT GTGTGGGCCG CAATGGCGCG
ATGGAAGATA TCGACGGGCC GCTTCTGTTC CTGTGCTCAG ACGCCTCCTC ATTTGTCACG
GGCCAAGTTC TGATGGTCGA CGGGGGGTAT ACGGCGAAAT GA
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| Protein sequence | MVDAGALFDL RGRVACVTGA SAGLGQRAAE VLADAGARVV GVARRADALA EWVERMGKPA
AAVAADLSDR GAIPQIAEDI CGPFGAPDIV VHAAGINTRE TADDVTGDGW DVTLNLNLAA
PFFLTQALVP AMKARGWGRV VSFASLQTSR AFPGGVAYGA SKAGIAQLTR AMAEAWSRDG
INANAIGPGF FPTELTGPVF ADPERAARNA AQTCVGRNGA MEDIDGPLLF LCSDASSFVT
GQVLMVDGGY TAK
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