Gene Jann_1392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_1392 
Symbol 
ID3933839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand+ 
Start bp1362186 
End bp1362860 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content63% 
IMG OID637903742 
ProductGntR family transcriptional regulator 
Protein accessionYP_509334 
Protein GI89053883 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0675425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0999005 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTGCCA TGGCGAAAAC TTCCGATCAG GCTTTGGGCA TGACGCGCGG GTCGACCGTG 
GGCCGGATTG AGGCCGCGTT GACGCAAGCG ATCTCGGCGG GAGAACTTGC ACCCGGCGAG 
CGCATTGACG AGGTCAAGCT GACCGAGCGG TTCGGCGTGT CCCGGACCCC GGTGCGCGAG 
GCGTTGTCGC GTCTGGTGGC GCAGGGGATC CTCATTCCCG GAGAGAAGCG CGGCGTTCGC 
GTTGCAGAGT ATACGCGAGA GCAATTGGCC CAGATTTTTG AAGCAATGCA CGAGATTGAG 
GCAGCATGCG CCCGTGTCGC GGCGCAGCGC CTGACCCTTC TGGCGCGGGT CGAGATCGAG 
GGGGCGCAGG CCGAGTGTAT GGCCGCCGCT GAGTCGGGCG ACCGCAGTGC CTACCTGAAG 
GCCAATGAGG CGTTTCACCT GACGATCTAC CGTGCGACCG GCAACCCCTA CATGGCCGAG 
ATCGCGTCTG AATTCCGCAA TCGAACGGGC GCTGCACGGG CCAAAAAATT TGCCACGCCC 
GAAGATCTTC TAACTTCCGC CCATAGTCAT GCAGACCTGA TCTCGCTGAT TTTCTCGGAG 
GATTCGGATG CCGCATCGGA CGGTATGAGG GCCCATATGG CGCAGAGTTT CCGCGCGACG 
CTGGCCGCCA ACTAG
 
Protein sequence
MGAMAKTSDQ ALGMTRGSTV GRIEAALTQA ISAGELAPGE RIDEVKLTER FGVSRTPVRE 
ALSRLVAQGI LIPGEKRGVR VAEYTREQLA QIFEAMHEIE AACARVAAQR LTLLARVEIE 
GAQAECMAAA ESGDRSAYLK ANEAFHLTIY RATGNPYMAE IASEFRNRTG AARAKKFATP 
EDLLTSAHSH ADLISLIFSE DSDAASDGMR AHMAQSFRAT LAAN