| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1390 |
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| Symbol | |
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| ID | 3933837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1359611 |
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| End bp | 1360945 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637903740 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_509332 |
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| Protein GI | 89053881 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00129811 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.103249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAGA CCTTAATGAC ATCCACAATG ATCGCGGGGG TTGCCTTCAC AGGTGCTGCC
CTCGCGGACG GGCATGGGGG CCCCTACGCC CCCTATGCGG GGGAGACACT GATCGTGAAC
TTCCCGGCGC ACCCCCATTA CAACGCCGTG CTGGAGGTTC TGCCCCAGTT CACCGAGGAA
ACCGGGATCG AGGTTGAGGT GGACATGCTG CCCTACCTTG ACATGCGCGA GCGTCAGACG
CTCGAGCTGA GCCTCGACGA AGGCGCCTAT GACCTGATCG CCTATGTGGT GTTCTCCAAG
GCCGACTACG TCTACGCGGA CCAGGTTTAC AACCTTGCGC CATTCTTCAT GAACCCGCGT
CTGGCCAATC CGGACTACGA TGCCGAAGAC CTGATCGACG GCTACGTCCA GAACATCGGC
GTGGCCGGTG GCGAGCGTGG CTATCTGCCG GGTCCCACGG GGTCGCTCTA CGGTCTGCCG
TTCGGGTCCG AGACATCGGT GATGTATTAT CGCACGGACG TGTTTGAAGA GCTGGGTCTT
GAACCTGCCA CGGACTATGA CACGCTGCTG GAGCAGGCCT GCATGATCCC TGAGCAGGTG
GACGGCATGG GCGGTGTTGC GTCCCGCGCG GCCTCTGGCC ACCAGGCCTC CCACGCGTTC
CTGCTGCACC TGGCGCCCTT GGGCGGCCGC GTGTTCGGTG ACGGATGGGA GCCGACCATC
AACTCCCCCG AAGGTGTTGC GGCTGCAGAA GCCCTGCGCA CCATCGTTGA GTGCGGTCCT
GAAGGATCGT CCGCGTTCGG TCCAAGCGAG GCGGCCAATG CCTTCGCCCA AGGGCAAGCC
GCGATGTTCA TCGACAGCAT CGCTTTTGCG GGCACGTTTG AGGACGAAAG CCGCAGCCAG
GTGGCAGGCA ATGTCGGGTG GGCCCCGCAT CCCTGTGCGG AGCAATGCGC CTCCCAGACG
GGCGGGTTCG GTCTTGCGAT CCCCCGCAAT GGCGCCAACC CCGAAGCGGC ATTCCTGCTG
ATGCAATGGC TGACCTCCCG TGAGGGCGAT CTGGCCGTGG CCATGGCCGG TGGTAACCCA
TCGCGCTTCT CCACCTATGC AAATGAAGAG CTGAACGCCC AGTACCCCTG GTCCGCGACG
TTTGGGGAAG CCTTGGCCGA TGCCGATCCC GACTGGCGTC CGATCATCCC GCCATGGGGC
CGGATCAACG CCGATATCGG CACCACGATG TCTCAGGTCC TGACCGAGGG TCTTGACCCG
CAGGAAGCCC TCGACGGCAT CGCGGAGCGT ACACGCACGC TGATGGAAGA AGAAGGCTAC
TATACCTGGC AGTAA
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| Protein sequence | MLKTLMTSTM IAGVAFTGAA LADGHGGPYA PYAGETLIVN FPAHPHYNAV LEVLPQFTEE
TGIEVEVDML PYLDMRERQT LELSLDEGAY DLIAYVVFSK ADYVYADQVY NLAPFFMNPR
LANPDYDAED LIDGYVQNIG VAGGERGYLP GPTGSLYGLP FGSETSVMYY RTDVFEELGL
EPATDYDTLL EQACMIPEQV DGMGGVASRA ASGHQASHAF LLHLAPLGGR VFGDGWEPTI
NSPEGVAAAE ALRTIVECGP EGSSAFGPSE AANAFAQGQA AMFIDSIAFA GTFEDESRSQ
VAGNVGWAPH PCAEQCASQT GGFGLAIPRN GANPEAAFLL MQWLTSREGD LAVAMAGGNP
SRFSTYANEE LNAQYPWSAT FGEALADADP DWRPIIPPWG RINADIGTTM SQVLTEGLDP
QEALDGIAER TRTLMEEEGY YTWQ
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