| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1338 |
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| Symbol | |
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| ID | 3933785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1304292 |
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| End bp | 1305605 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637903688 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_509280 |
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| Protein GI | 89053829 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.896332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAGG GTCTGATCGG GTTCGTGGCC GTCCTGGCGC TTGTCTTGCT ACGCCTGCCA
ATCGCCTTCG CGATGGGGTT CGTCGGCATG ATAGGCTTCA TGATCGACAG CAATTTCCGC
GCCTCCATCT CCATGGTCGC GCGGCTGATC ATCGACACCA GCCAGAATTA TGGCCTGTCG
GTCGTGCCGC TGTTCATCCT GATGGGTCTG TTCGTCAACA AGGCGGGCAT CAGCCGAGAG
CTTTATGCCG CCTCCAATGC CTTCCTTGGC CATTTGCGTG GCGGGCTGGC AATGGCAACA
ATCGTGGCCT GTGGCGGGTT TGCTGCCATC TCGGGCTCCT CTCTCGCCAC GGCCGCCACG
ATGTCCAAAG TCGCAATGCC CGAGATGCGC CGCCACGGCT ATGCCGATGG GCTGGCCACG
GCCTCCATCG CGGCAGGTGG CACGCTCGGC ATCCTGATCC CGCCCTCTGT GATCCTTGTC
ATCTATGGCC TGCTGACCGA GACCTCCATC GGCCAGCTGT TCATTGCGGG GATCATCCCC
GGGGCGCTTG GCATCGTTTT CTACCTCGGC GCGGTCAGGT TTTCCGTTTG GCGCAAGCCG
GAAAGTGGCC CCGCTGGCCC CAGAACACCG CTGCCCGCGC GCTTGAAAAG CCTGCGAGAG
GTTTGGGCGG TCCTGTTGCT TTTCTTCCTC GTTATCGGCG GGCTTTACGG CGTGTTCGAC
GTGGCGCCGC TGAACCTGAC CTTCTCCCCC ACGGAAGCCG CCGGAATGGG CGCCATGGGC
GCGTTCCTGA TCGCGCTCGC GCGGCGCCGC CTGTCTTTCG CGGACACGGT TGAGGTATTG
GTCGAAACCT CAAAGACAAC CGCATCACTC TTCGCGGTCC TGATCGGCGC TTGGATTTTC
TCAAACTTCG TCAACGTCGC GGGCCTGCCG CAGGGCCTGT CCGAATTGGT GACAACCTAC
AACCTCGCCC CCTGGGCCGT CATGGCACTC ATCATGCTGA TCTACATCGT CCTGGGCTGC
GTGTTCGAGA GCCTTTCGAT GCTGCTGCTG ACGGTGCCGA TCTTCTTCCC GGTCGTCACA
GGCCTGGGGT TCGATCCGGT CTGGTTCGGC ATCGTCGTCG TCGTGGTGGT GGAGATCAGC
CTGATCACCC CACCTGTGGG CCTGAACGTT TTCGTGTTGA AAGGCGTGGT GGGCGACGTG
TCCACCGGCA CCATCTTCAG GGCGGTCACA CCGTTCTGGA TGGCTGATAT CGTGCGACTG
CTGCTTTTGC TGGCGCTGCC TGGCCTGGTT CTGTTCCTGC CAAGCCAGAT GTAG
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| Protein sequence | MFEGLIGFVA VLALVLLRLP IAFAMGFVGM IGFMIDSNFR ASISMVARLI IDTSQNYGLS
VVPLFILMGL FVNKAGISRE LYAASNAFLG HLRGGLAMAT IVACGGFAAI SGSSLATAAT
MSKVAMPEMR RHGYADGLAT ASIAAGGTLG ILIPPSVILV IYGLLTETSI GQLFIAGIIP
GALGIVFYLG AVRFSVWRKP ESGPAGPRTP LPARLKSLRE VWAVLLLFFL VIGGLYGVFD
VAPLNLTFSP TEAAGMGAMG AFLIALARRR LSFADTVEVL VETSKTTASL FAVLIGAWIF
SNFVNVAGLP QGLSELVTTY NLAPWAVMAL IMLIYIVLGC VFESLSMLLL TVPIFFPVVT
GLGFDPVWFG IVVVVVVEIS LITPPVGLNV FVLKGVVGDV STGTIFRAVT PFWMADIVRL
LLLLALPGLV LFLPSQM
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