| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1324 |
|---|
| Symbol | |
|---|
| ID | 3933771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1289505 |
|---|
| End bp | 1290239 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637903674 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_509266 |
|---|
| Protein GI | 89053815 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.521571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCC ATGTGGTGAT CTCCGGCGGC GGCACGGGTG TGGGCGCGGA GACCGCGAAG
CAGTTCGCGC AGGCGGGCTA CGCCGTGACG ATCCTGGGCC GAACCGAGGC GACGTTGCAG
GCGCAGGGGC TGGCCTATCA GGTGTGCGAT GTCACGGACG ACGTCGCCGT CAAACGCGCC
ATGGAAGCTG CCCGGTCAGC ACGAGGTCCG ATCAGCGTGG TGATCGCCAA TGCCGGTGCC
GCGACCTCCC AACCCTTCGC CAAGATGACC GCCGCCGATC TGTCGGCGAT GACCGATGTA
AACCTGACGG GCGTGTTCAA CCTGTGGCAG GCGGCTTTGC CGGATATGAA GGCCGCCAAG
CAGGGCCGCA TGATCGCGAT TGCCTCAACC GCTGGCCTCA AGGGCTACCC TTATGTGGCG
GGCTACTGCG CGGCCAAACA TGGCGTTATC GGTCTGACGC GCGCCCTGGC GCTGGAACTG
GCCATGTCCG GCATCACGGT CAACGCCATT TGCCCGGGTT TCATTGAAAC GCCGCTTCTG
GACCGCTCCA TCACCAACAT CGTTGAGAAA ACGGGGATGA GCGTGGACGC CGCCGCCAAG
TCCTTGACGA AGGGCAACCC GCAGCGCCGC TTCATTCAGA CCGACGAGGT CGCAGCAACC
GCGCTTTGGC TGTGCTCAGA CGCTGCAAAA TCGGTAAACG GCCATGCCCT TAGCCTGTCG
GGGGGGGAGA TCTGA
|
|---|
| Protein sequence | MTSHVVISGG GTGVGAETAK QFAQAGYAVT ILGRTEATLQ AQGLAYQVCD VTDDVAVKRA
MEAARSARGP ISVVIANAGA ATSQPFAKMT AADLSAMTDV NLTGVFNLWQ AALPDMKAAK
QGRMIAIAST AGLKGYPYVA GYCAAKHGVI GLTRALALEL AMSGITVNAI CPGFIETPLL
DRSITNIVEK TGMSVDAAAK SLTKGNPQRR FIQTDEVAAT ALWLCSDAAK SVNGHALSLS
GGEI
|
|---|
| |