| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1316 |
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| Symbol | |
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| ID | 3933763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1279946 |
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| End bp | 1281451 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637903666 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_509258 |
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| Protein GI | 89053807 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGGAC CATTTGACAT CATTCTGATC GCCAGCGGGC TTGTGCTATG CGGCATAAGT
CTTGTGGCGG GGATCGCGTT TTCGGTTGTC GCTATTATCG CATTTGCGAT CGCCATGGGT
GGCGCTCTGA TGATCGGAAC GCCGCTTGCA CTTTTTCTGG CGATGGCGTT CTGGGCTGCG
GGCGTTCTTG TCGCGGGCAT GGTTTTGCGT CGGTTCCGCA GACGTGCACC GGCCAACGGA
TCGCGCGTGG GTGGCACCGT TGTCATGGTC GCGTTGGTAG TGGCAGCCTC TGTCTTTGCG
ACCGGCGCTT GGAATACGCG CACCTCCGAC AGCGTGCTGA TCCGGTCATC CGCAAGCTAT
CCTTTCATCG CGCTGGCCGG TGAGGCGGTT TCGCGGTTCG ATGTGGTGGA GGCGGCGATG
ACCTTTCCAG CGCCTGTGGT CCCTAAACCT GCGATCTCCC CTGCCCCTCC GGCGCCGCCG
CGTCCGATCG ACTGGGCAGA GGTGCAGCCG TTTGACAACC AGATCACGCG GATCATCGCC
GGTAACGTTG TGGCCGCTGA CCGCGCCCCG ATCTCTTTCG GGGCGACCGG CACGATCCTG
CGCGTATTCG TGGATATCGG CGACCGGTTT GAGCGCGGAG ATATCCTGGC AGAGCTTGAT
CCGACCGCGC TGCAAATCGC CTTGGAAGAA CGCCAGGCCG GGTTGATGGA GGCCCGGGCC
CGTGCTCAGG AAGCGCAGAC CACGCTCGGA CGTCAAATGC AGCTTTTCGG CAGCGATGTT
GTCAGCCAGG CCGCCCTCGA TAGCGCCACG GCGATGGCCG ATAGCGCCCA GGGGCGGCTT
GAGATGGCCC GCGCCGGTGT GCGTCAGGCA GAAGACCGTC TGGCCGACGC TGTTCTGCTG
GCCCCTTACG ATGGCATCAT CGCGGCGCGA CTGATTGAGC CGGCTCAATC TGTTCAGGCC
GGCGCTCCGG CGTTTGAAAT TCAAAGTGCC GATGCCGGGT TTCAGATCGA GATCTCGATG
CCCGACACGC TGATTACGCA AATTGAACAA GGGTCTGAGC ATCATGCGCT GATCCTTGAC
GGCTCTGACA CCGAAGTGAG CGTGCGTGTG CATGAGATTG GCAGCCGCGC AAATGCCGCC
ACCGGGTTCC CTGTCATGCT GGACATCCTG GAACCTGATG CCCTGATCCG TGCGGGCATG
ACGGCGGAGA TATCTCTGAA TCTCAGGCTT GATGCCCATG ACCTGCGGGA CAGGCCCCTT
CTGGCAATTC CATACACCGC GATATTGCCC GCGGAGGATG AGGGGCACGT CGCCTTTGTC
TTTGACTACA CGTCCAACAC GCTGGAGCGG CGCGCGATCC TTGTCGCGGC GCGCGAAGGG
TCGACCGTTC TGGTGTCTCA CGGAATGGAG GACGGCGACG TCGTCGCCAC GCGCGGCCTC
GCCTTTCTTG AAGACGGCCA GCGCGTAACC TTGCGGGGCG TGGGCATCGC CCGTTACGAC
AATTGA
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| Protein sequence | MFGPFDIILI ASGLVLCGIS LVAGIAFSVV AIIAFAIAMG GALMIGTPLA LFLAMAFWAA
GVLVAGMVLR RFRRRAPANG SRVGGTVVMV ALVVAASVFA TGAWNTRTSD SVLIRSSASY
PFIALAGEAV SRFDVVEAAM TFPAPVVPKP AISPAPPAPP RPIDWAEVQP FDNQITRIIA
GNVVAADRAP ISFGATGTIL RVFVDIGDRF ERGDILAELD PTALQIALEE RQAGLMEARA
RAQEAQTTLG RQMQLFGSDV VSQAALDSAT AMADSAQGRL EMARAGVRQA EDRLADAVLL
APYDGIIAAR LIEPAQSVQA GAPAFEIQSA DAGFQIEISM PDTLITQIEQ GSEHHALILD
GSDTEVSVRV HEIGSRANAA TGFPVMLDIL EPDALIRAGM TAEISLNLRL DAHDLRDRPL
LAIPYTAILP AEDEGHVAFV FDYTSNTLER RAILVAAREG STVLVSHGME DGDVVATRGL
AFLEDGQRVT LRGVGIARYD N
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