| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1310 |
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| Symbol | |
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| ID | 3933757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1269649 |
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| End bp | 1270788 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637903660 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_509252 |
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| Protein GI | 89053801 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.673983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAATC AAACGAGTAG TGTCTGGTGG CGGCGCGCGT TACGTCAGCT CGTAACAATC
AGCGTTACGT CGATTGTGCT CATAGGCGCT GGCGCTGCAG TGTTCGTCGG CTCAACGCAG
CTTGCCAATC GGGCCGAGGC CACAGCAGTG ACCGAAATCG CCGACCCTAT ACCGGTTCAG
GTCGCGTCGC TTGATCTGTC GGACGGGTTC GATATCCCGC GTCAGTTTGT TGGACAGGTC
GAGGCCGCTG CGAGTGTCGT TCTTTCGTTC GAACTGGCGG GGCGGCTTAG CGACCTGACA
GTACAGGAGG GCGGTGAAGT CGAGGCCGGC ACGGTTCTGG CCCGGCTGGA TACATCACTG
CTGGAGACCG AGCGGACACG CCTTGAAGCA AGCCGATCAG CCACCCGCGC ACAGCTGGAG
CTTGCCGAAA ACCGGTTGAT CCGCGCTCAG GCGCTGCTGG ACGACGGACA CATCAGCCAG
GAAGCTCTGG ATCAGGCGCT GGCCACGCGG GACGAATTGT CTGGGCGCAT CATGGAAATT
GAAGCGGCAA TTAATGCAGT CGCCATCAAC CTAGAGAAAT CTGAACTGCG CGCACCATTC
TATGGCCGTG TCGGCGTGCG CAACGTGGAT GGGGGTGAGA CATTGTCCGC CGGAGCCCCT
GTTTTGACGT TGATCGAAAC CGCCGCACCC GAGGTTCGGG TTGGCCTGCC GCTTTCTGTC
GATGCGGCGC GCCTTGAGAA CGTATCCATC GAAATTGGCG GCGAGAGCTA TCCCGCACGA
TTGGCGCAGG TTCGCCCCGA CATTGATACT GTGACGCGCA CGCGCACGGC CCTTTTCACG
CTGCTGACTG ACGACACGCC AACCTTTGGT CAGACGGCCA CGTTGACGCT GGGGACCCGC
GTTGAGGCTC CGGGCACCTG GGTGCCGCTT GACGCGTTGC AAGAGGGGAT CGGTGGAACC
TGGAACCTTC TGGTGGTCGA AGAGGAGGTG GTGCGGGTCG CCATGGTCGA AGTGCGCCAT
GCAGATGAGA CACGCGCCTA TGTCACCGGC ACGTTCTCGC CCGGCACACA GATGATCCAG
ACCGGCGCAC ACCGGGTTGT GCCTGGCCAG GTTATCCAAA CTCTGACCGC GGCGGAGTAA
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| Protein sequence | MVNQTSSVWW RRALRQLVTI SVTSIVLIGA GAAVFVGSTQ LANRAEATAV TEIADPIPVQ
VASLDLSDGF DIPRQFVGQV EAAASVVLSF ELAGRLSDLT VQEGGEVEAG TVLARLDTSL
LETERTRLEA SRSATRAQLE LAENRLIRAQ ALLDDGHISQ EALDQALATR DELSGRIMEI
EAAINAVAIN LEKSELRAPF YGRVGVRNVD GGETLSAGAP VLTLIETAAP EVRVGLPLSV
DAARLENVSI EIGGESYPAR LAQVRPDIDT VTRTRTALFT LLTDDTPTFG QTATLTLGTR
VEAPGTWVPL DALQEGIGGT WNLLVVEEEV VRVAMVEVRH ADETRAYVTG TFSPGTQMIQ
TGAHRVVPGQ VIQTLTAAE
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