Gene Jann_1217 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_1217 
Symbol 
ID3933661 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp1176684 
End bp1177574 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content64% 
IMG OID637903565 
Productpseudouridine synthase, Rsu 
Protein accessionYP_509159 
Protein GI89053708 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.970304 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGATG GTGAACGAAT AGCAAAGCGG CTGAGCCGTG CGGGCGTGGC CTCGCGGCGG 
GAAGCGGAAC GGATGATCGA GGCCGGGCGT GTGAGCGTCA ACGGTGCGGT GATCGAGAGC
CCGGCGTTGA ACGTGACCGA CGCCGATGTG ATTGAGGTCG ACAACGCCCC CCTGCCCGAA
ATCGAGCGGC CCCGCGTGTG GATGTATCAC AAGCCCACCG GGCTGGTGAC CAGCAATGCC
GACGAGAAGG GCCGCGAAAC AGTCTTCGAC AAGCTGCCCG ACAGCTTGCC GCGGGTGATG
TCTGTGGGGC GGCTCGATAT GAACTCCGAA GGGCTTTTGT TGCTGACCAA TGACGGCGGG
GTGAAGCGGA AGCTGGAATT GCCCTCAACG GGCTGGTTAC GCAAATACCG CGTGCGCATG
AAGGGCGCGC CCAAGGACGA GGATTTTGCG CCTCTGCGGC GGGGAATTGT GGCGGAGGGG
GAGCGGTTTC AGCCGATGGA GGTCTCGCTT GACCGCGTTC AGGGGGCAAA TGCCTGGATC
ACGGTAGGCT TGCGCGAAGG CAAAAATCGG GAGATCCGCC GCGCCATGGC GGAACTGGGG
TTCGAGGTGA ACCGATTGAT TCGTGTCTCT TACGGCCCGT TCCGGTTGGG TGAGCTAAAG
CCGGGCGAGG TGGAAGAAGT CCGCCCCCGT GTCCTGCGCG ATCAACTGGG GTTGGAGGCT
GCGACAGAGG GCCATGCGGA ACCGAAGGCC AAGCCAGCAT TCAAAGGCAA GCGTCGCAAG
GCGCCGGACG CCCGGAAAAG CGGTGAACGG TTGGCCCCTC GGGGCAAGCC AAGCGGTGCG
GTTAGGTCGG ATCGCCGGGG GTCTGGTCGT CCTCCTCGTC GGAAAGACTG A
 
Protein sequence
MVDGERIAKR LSRAGVASRR EAERMIEAGR VSVNGAVIES PALNVTDADV IEVDNAPLPE 
IERPRVWMYH KPTGLVTSNA DEKGRETVFD KLPDSLPRVM SVGRLDMNSE GLLLLTNDGG
VKRKLELPST GWLRKYRVRM KGAPKDEDFA PLRRGIVAEG ERFQPMEVSL DRVQGANAWI
TVGLREGKNR EIRRAMAELG FEVNRLIRVS YGPFRLGELK PGEVEEVRPR VLRDQLGLEA
ATEGHAEPKA KPAFKGKRRK APDARKSGER LAPRGKPSGA VRSDRRGSGR PPRRKD