Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_1217 |
Symbol | |
ID | 3933661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 1176684 |
End bp | 1177574 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637903565 |
Product | pseudouridine synthase, Rsu |
Protein accession | YP_509159 |
Protein GI | 89053708 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.970304 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGATG GTGAACGAAT AGCAAAGCGG CTGAGCCGTG CGGGCGTGGC CTCGCGGCGG GAAGCGGAAC GGATGATCGA GGCCGGGCGT GTGAGCGTCA ACGGTGCGGT GATCGAGAGC CCGGCGTTGA ACGTGACCGA CGCCGATGTG ATTGAGGTCG ACAACGCCCC CCTGCCCGAA ATCGAGCGGC CCCGCGTGTG GATGTATCAC AAGCCCACCG GGCTGGTGAC CAGCAATGCC GACGAGAAGG GCCGCGAAAC AGTCTTCGAC AAGCTGCCCG ACAGCTTGCC GCGGGTGATG TCTGTGGGGC GGCTCGATAT GAACTCCGAA GGGCTTTTGT TGCTGACCAA TGACGGCGGG GTGAAGCGGA AGCTGGAATT GCCCTCAACG GGCTGGTTAC GCAAATACCG CGTGCGCATG AAGGGCGCGC CCAAGGACGA GGATTTTGCG CCTCTGCGGC GGGGAATTGT GGCGGAGGGG GAGCGGTTTC AGCCGATGGA GGTCTCGCTT GACCGCGTTC AGGGGGCAAA TGCCTGGATC ACGGTAGGCT TGCGCGAAGG CAAAAATCGG GAGATCCGCC GCGCCATGGC GGAACTGGGG TTCGAGGTGA ACCGATTGAT TCGTGTCTCT TACGGCCCGT TCCGGTTGGG TGAGCTAAAG CCGGGCGAGG TGGAAGAAGT CCGCCCCCGT GTCCTGCGCG ATCAACTGGG GTTGGAGGCT GCGACAGAGG GCCATGCGGA ACCGAAGGCC AAGCCAGCAT TCAAAGGCAA GCGTCGCAAG GCGCCGGACG CCCGGAAAAG CGGTGAACGG TTGGCCCCTC GGGGCAAGCC AAGCGGTGCG GTTAGGTCGG ATCGCCGGGG GTCTGGTCGT CCTCCTCGTC GGAAAGACTG A
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Protein sequence | MVDGERIAKR LSRAGVASRR EAERMIEAGR VSVNGAVIES PALNVTDADV IEVDNAPLPE IERPRVWMYH KPTGLVTSNA DEKGRETVFD KLPDSLPRVM SVGRLDMNSE GLLLLTNDGG VKRKLELPST GWLRKYRVRM KGAPKDEDFA PLRRGIVAEG ERFQPMEVSL DRVQGANAWI TVGLREGKNR EIRRAMAELG FEVNRLIRVS YGPFRLGELK PGEVEEVRPR VLRDQLGLEA ATEGHAEPKA KPAFKGKRRK APDARKSGER LAPRGKPSGA VRSDRRGSGR PPRRKD
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