| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1112 |
|---|
| Symbol | |
|---|
| ID | 3933556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1071254 |
|---|
| End bp | 1072276 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637903460 |
|---|
| Product | cupin 2 protein |
|---|
| Protein accession | YP_509054 |
|---|
| Protein GI | 89053603 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.792724 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.152663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATG CCGCTCTCGA ACCCCGCGCA GATATGTCCC AGCGTGCAGA TATGTCCAAG
CGTATCGTGC GCTATGGCGA TCTGAAGCCC TGCAAGACTG CCTTTATTGA CGCCCACACG
CCCGGATCCG ATCAGAAGGA GAACTTCACG ATCATCGGCG GCGGGGTCAG TGAAAGTGCA
GACCAGCACG TCCATATCGC GGAGGTCCAT GGCTTCAACA TCGGCGCGGC GGGTCAACCT
CCGAAATGCC GGAACAGCCT GCATTCCCAC CGCACGGCAG AGGTGTTCTT TGTGCTGAAA
GGGCGTTGGC GTTTTTTCTG GGGCCGTCAT GGCGATGCGG GGGAGGTCAC GCTGGAGGAA
GGCGATATCT TCAACATCCC CACCGGAATT TTCCGCGGGT TTGAGAATAT CGGCAATGAT
TACGGGATGA TCATGGCGAT CCTGGGCGGG GACGATGCGG GCGGCGGTGT GCTTTGGGCG
CCGCAGGTAA TCCAGGACGC CAGCGATCAC GGGCTGGTCC TGGCGGAGAC GGGCAAGCTT
TACGACACCA AGAAGGGTGA GGTCCTGCCC GATGGCGTGC ACGCCCTCGC GCCGATGTCC
GACGCGGAGG CTGATGCCTA CCCCGCCCCC ACCACGGCGG ACGTCGTGCC CCATTACGTC
GCGCGCTACT GGGATATGGT CGCGCTGGCC GACAAGACCC CCGCCAGAGT GATCGGCGAG
GACGGGATGC TCCGCGACAA GCCGGGGTTT GAGGTGGACC TGATCACCCG CGCTTCCGCC
AGCACCGCGA TGCACCGCCA TGACCGCCAA TCGGTGCTGA TGCCGGTCAC GGGCCATTGG
CGCGTCACCT GGGCCGCCAA CGATCACTAC CCCGCCGGCA CTGCGACCCT GGCCCCCGGC
GACACGATGT CCGTGCCCGC CGACCTTGAC CATTCCGCCG TGCCGTCGAT GACCGGCGAT
GCCGCGCTCT ACCATGTCAT TGCCACTGAT GATCCGGCCG GAGCCACATG GAGCGCGCCA
TGA
|
|---|
| Protein sequence | MTHAALEPRA DMSQRADMSK RIVRYGDLKP CKTAFIDAHT PGSDQKENFT IIGGGVSESA
DQHVHIAEVH GFNIGAAGQP PKCRNSLHSH RTAEVFFVLK GRWRFFWGRH GDAGEVTLEE
GDIFNIPTGI FRGFENIGND YGMIMAILGG DDAGGGVLWA PQVIQDASDH GLVLAETGKL
YDTKKGEVLP DGVHALAPMS DAEADAYPAP TTADVVPHYV ARYWDMVALA DKTPARVIGE
DGMLRDKPGF EVDLITRASA STAMHRHDRQ SVLMPVTGHW RVTWAANDHY PAGTATLAPG
DTMSVPADLD HSAVPSMTGD AALYHVIATD DPAGATWSAP
|
|---|
| |