| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1106 |
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| Symbol | |
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| ID | 3933550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1066949 |
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| End bp | 1067704 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637903454 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_509048 |
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| Protein GI | 89053597 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.14536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGC CGCGTACCCC GTCATTCTCC CTCGCTGGAC AGCGGGCGTT TGTGCCCGGC
GGATCGCGCG GGATTGGCCT TGGATGCGCG GTCGCGCTGG CCGAGGCGGG GGCCCATGTG
GTGATCGCCG CGCGGGGCAG GGATGCGGTG GACGCGGCTA TGGCCGAGAT AACGCAGGCC
GGGTTTTCGG CCGAGGGGAT CACGCTCGAC ATCACCGATG TCGATGCGAC CCGCGCCGCT
GTTGCCGCTA TGGGGCGGCT GGATATCCTG TGCAACTCCG CAGGCCTTGC GCGCCATACG
CCTGCCACCG ACACCACGCC CGAGGATTTC GATGCCGTGC AGGCCGTCAA TGTGCGCGCC
GCCTATTTTC TGGCGCAGGC CGCCGCCGCG CAGATGATTG ATGGCGGGTC GATCATTCAG
GTCTCCAGCC AGATGGGTCA TGTGGGCGGT ATTGATCGCG CAGTCTATTG CGCCACAAAA
CACGCGGTGG AAGGTTTCAC CAAGGCCATG GCCATCGAAT GGGGGCCGCG CAATATTCGC
GTCAACACGC TGTGCCCCAC ATTCATTCGC ACGCCGCTGA CGGCCCCCAC CTTCGCGGAT
CCCGAAAAAC GCGCCTGGAT CGAGAGCAAG ATCAAGTTGC CGCGCGTGGC AGAGGTGGAG
GATATCATGG GGGCGGTTCT GTTTCTGGCA TCGGGTGCCA GCGCCATGGT GACGGGCACG
TCGATCCTTG TCGACGGGGG ATGGACGGCG GGATGA
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| Protein sequence | MSLPRTPSFS LAGQRAFVPG GSRGIGLGCA VALAEAGAHV VIAARGRDAV DAAMAEITQA
GFSAEGITLD ITDVDATRAA VAAMGRLDIL CNSAGLARHT PATDTTPEDF DAVQAVNVRA
AYFLAQAAAA QMIDGGSIIQ VSSQMGHVGG IDRAVYCATK HAVEGFTKAM AIEWGPRNIR
VNTLCPTFIR TPLTAPTFAD PEKRAWIESK IKLPRVAEVE DIMGAVLFLA SGASAMVTGT
SILVDGGWTA G
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