| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1100 |
|---|
| Symbol | |
|---|
| ID | 3933544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 1061269 |
|---|
| End bp | 1061682 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637903448 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_509042 |
|---|
| Protein GI | 89053591 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3686] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000107053 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0128168 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACCC TTCCCACCGA ACTGGGCGTG CTGACCTGCC TGATGCTTCT GGCAGCCTCG
CTCTGGATCC CCTACATCGT CGGCGTCAAC AAATATGAAC GCGAAGGCGT GGACAGCTTC
CAGCGCCCCC CCGGCGATGA CGGCCTGCCC GATTGGGTGG CCCGCGCCAA CCGCGCCCAC
TTGAACCTGC TCGAACAGGG CATGCCCTTC GCGGTCATCA TCCTGATCCT CCACCTCGCC
GATGGTTTCA CCGCCGTCAC CTACTGGACC GCCATCGTGT TCTTCTGGCT GCGCGTGGCC
CACGCCGTAG GGATGATCAC CGGCACGGCA CGCATGCCGC TCCGCCCATT GATCTTCACC
GCAGGCTGGG TCTGCATCAT GATCCTCGGC GTCTCGGCCT TCATGGCAGG CTGA
|
|---|
| Protein sequence | MSTLPTELGV LTCLMLLAAS LWIPYIVGVN KYEREGVDSF QRPPGDDGLP DWVARANRAH
LNLLEQGMPF AVIILILHLA DGFTAVTYWT AIVFFWLRVA HAVGMITGTA RMPLRPLIFT
AGWVCIMILG VSAFMAG
|
|---|
| |