| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1084 |
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| Symbol | secD |
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| ID | 3933528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1047889 |
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| End bp | 1049559 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637903432 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_509026 |
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| Protein GI | 89053575 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.111435 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAGA TCCCGCTCCT GAACCGGCTG CTGATCATCT TGACGGTTCT TGTGGGCCTG
AGTTTCGCGA TGCCGAACTT CTTTTACGGC ACTGTGGAGC GGCACAATGA TGCCCTGGCC
GAGATTGAGA GGACGGGCGC GCAGACGCCG GAGCAGGTGG CGGATGTGGC GGCCTGGCCA
AGCTACCTGC CCGCGACGCT GGTGAACCTG GGTCTCGACC TGCGCGGCGG TGCGCATCTG
CTGGCGGAAG TTCAGGTCGA AGACGTCTAT GTGCAGCGGA TGGACAGTCT GTGGCCGGAA
GTGCGCGATG CGCTGCGCGG CCTGCGGGAC ACGGTGGGCA CGATCCGCCG CATTGACGCG
GAGCCGGGGC TTTTGCAGGT CCGCATCAGC CAGCCCGAAG GAATGGCAGC CGCACTGGCC
GCGGTCCGGG AATTGGGCCA GCCGGTCGTC AGCATCACCG GTGGGTTCGG CGAGAGCACG
CTGGATGTCA GCGGCGTGGG CGACATTATC ACCGTGCGCC TGAGCGACGC CGAGCAGGCC
GCCACCAACG ACCGCACGTT GCAGCAAAGC ATCGAGATCG TGCGCCGTCG CGTCGATGAA
GCGGGCACGC GAGAGCCGAC AATTCAGCGT CAGGGCGCGG ATCGCATCCT GATTCAGGTG
CCCGGCATCG GGTCCGCGCA GGAGCTGAAA GAGCTGATCG GCACCACGGC TCGGCTGACC
TTCCATCCGG TTGTGGGACG CGCGAGTGGC CCTGATCAGG ACACCGAAAG CCGCCAGATC
ATCCTGCCGT CGATTGATGA GGGCGGCGGC TACTACATCT TGGAAGAAAC GCCGGTCGTC
TCCGGCGATG ATCTTGTCGA CAGCCAGCCG GGCTTTGAAC AGCAGTCGGG CAACCCGATT
GTGAGCTTCC GCTTCAACCC GTCGGGCGCG CGGGATTTCG GCGATTACAC CGCCGCCAAT
GTCGGCGCGC CGTTCGCGAT TGTGCTGGAC AATGAGGTGA TCAGCGCCCC GGTGATCCGG
TCGGCCATCA CCGGCGGCGC GGGGCAGATC AGCGGCAGGT TCACGGTGGA AAGCTCCACC
GAACTGGCGA TCCTGCTGCG CGCGGGCGCA TTGCCGGCGG AAATGACGTT CCTGGAAGAA
CGCACCATCG GGCCAGAACT GGGCGCGGAC AGCGTGCAGG CGGGCCAGAC CGCCGCGCTG
ATCGCCTTCG CCGCTGTGCT GATCTTCATG ATCGCCAGCT ACGGTCTGTT CGGCGTGTTC
GCGAGTATCG CGCTGGTCCT GAACGTGGGC CTGATCTTTG GCGTTCTGTC CCTGATCGGG
GCGACGCTGA CCCTGCCGGG GATCGCCGGG ATCGTGCTGA CCATCGGTAT GGCCGTCGAT
GCCAACGTGC TGGTGTTCGA GCGGATCCGC GAGGAATTGA AAACCGCCAA GGGCCCCGCG
AGGGCCATCG AGCTTGGCTA TGAGCGCGCG CTCAGCGCCA TCATCGACGC CAATATCACG
ACGTTCATCA TCGCCACGAT CCTGTTTGTT CTGGGCTCCG GCCCCGTGCG CGGCTTCTCC
GTCACGCTGG GGATCGGGAT CGTCACGTCG GTCTTCACCG CGATCTACGT CACCCGCCTG
TTGCTGGTCT TCTGGTTCGA GCGTCGTCGC CCGAAAACAA TCGAGGTATA A
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| Protein sequence | MLQIPLLNRL LIILTVLVGL SFAMPNFFYG TVERHNDALA EIERTGAQTP EQVADVAAWP
SYLPATLVNL GLDLRGGAHL LAEVQVEDVY VQRMDSLWPE VRDALRGLRD TVGTIRRIDA
EPGLLQVRIS QPEGMAAALA AVRELGQPVV SITGGFGEST LDVSGVGDII TVRLSDAEQA
ATNDRTLQQS IEIVRRRVDE AGTREPTIQR QGADRILIQV PGIGSAQELK ELIGTTARLT
FHPVVGRASG PDQDTESRQI ILPSIDEGGG YYILEETPVV SGDDLVDSQP GFEQQSGNPI
VSFRFNPSGA RDFGDYTAAN VGAPFAIVLD NEVISAPVIR SAITGGAGQI SGRFTVESST
ELAILLRAGA LPAEMTFLEE RTIGPELGAD SVQAGQTAAL IAFAAVLIFM IASYGLFGVF
ASIALVLNVG LIFGVLSLIG ATLTLPGIAG IVLTIGMAVD ANVLVFERIR EELKTAKGPA
RAIELGYERA LSAIIDANIT TFIIATILFV LGSGPVRGFS VTLGIGIVTS VFTAIYVTRL
LLVFWFERRR PKTIEV
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