| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1009 |
|---|
| Symbol | |
|---|
| ID | 3933453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 964285 |
|---|
| End bp | 964980 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637903357 |
|---|
| Product | 3-oxoacid CoA-transferase, subunit A |
|---|
| Protein accession | YP_508951 |
|---|
| Protein GI | 89053500 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.996272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.822208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG TCTTTGGCTC GGCAGCGGAC GCCCTTGATG GGGTCCTGTT TGACGGAATG
ATGATCGCGG CGGGCGGCTT CGGCCTTTGC GGTATCCCGG AATTGCTGAT CGACGGTATC
GTCGCGGCGG GCACCAAGGA CATCACCATT GCGTCCAACA ATGCGGGCGT GGATGATTTC
GGCCTCGGCA AGCTGTTGGC GACCCGACAG GTCAAGAAGA TGATGTCCAG CTACGTGGGC
GAGAACGCGG AATTCATGCG GCAATATCTG TCGGGCGAGC TGGAGTTGGA GTTCAACCCC
CAGGGCACTC TGGCCGAGCG GATGCGCGCA GGCGGTGCGG GCATCCCCGG CTTTTACACC
AAGACCGGCG TGGGCACGGT GATCGCCGAG GGGAAAGAGG TGAAACGCTG GGGTGAGCAG
GACTATATAC TGGAAGAAGG CATTTTCGCC GACCTCTCCA TCGTGAAGGC CTGGAAGGCC
GACGCCACGG GCAACGCCGT GTTCCGCAAA ACCGCGCGCA ACTTCAACCC GCCCGCCGCC
ATGTGCGGCA AAGTCTGCAT CCTTGAGGTT GAGGAGATCG TGGAGACCGG CAGCCTCGAC
GGCGACGCCA TCCACCTGCC CGGCATCTAT GTGCACCGCA TGATCCAGGG CGAACATGAA
AAACGGATCG AGCAGCGCAC CACCCGCGCC GCTTGA
|
|---|
| Protein sequence | MKKVFGSAAD ALDGVLFDGM MIAAGGFGLC GIPELLIDGI VAAGTKDITI ASNNAGVDDF
GLGKLLATRQ VKKMMSSYVG ENAEFMRQYL SGELELEFNP QGTLAERMRA GGAGIPGFYT
KTGVGTVIAE GKEVKRWGEQ DYILEEGIFA DLSIVKAWKA DATGNAVFRK TARNFNPPAA
MCGKVCILEV EEIVETGSLD GDAIHLPGIY VHRMIQGEHE KRIEQRTTRA A
|
|---|
| |