| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0976 |
|---|
| Symbol | |
|---|
| ID | 3933420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 932174 |
|---|
| End bp | 932692 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637903324 |
|---|
| Product | OmpA/MotB |
|---|
| Protein accession | YP_508918 |
|---|
| Protein GI | 89053467 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.105437 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTTT CCTTTCTGAA ACCAACCCTT CTGGTAGCAA CGCTGGCCCT TGCGGCCTGT
TCGCAAGGGG GGCTGAACGG CGATGGTGCA ATTGGCGGCG CCGGTGGAGC CGGTGCCGGT
GGCATTGGGT CGGGCGGGGT CGGTGATCCG ACAAGCCCTG TCTACTTCAA CGAAGTGGTG
GGTGACCGCG TTCTGTTCGC CGTCGATCAA TCCACCCTGT CGTCAGGGGC GCAGAGCGTT
CTGGCGGGCC AAGCCCAATG GCTGTTGTCA AACCCCGAGT TCACCGCCCT TATCGAGGGG
CACGCGGATG AGCAGGGCAC GCGGGAATAC AACCTCGCCC TTGGGGCGCG CCGTGCGGCT
GCGGTACGCG AATATCTGGT GAGCCAGGGC GTGCCCGATG CCCGCCTGCG CACGATCTCT
TACGGCAAGG AACGTCCCCT GCAAATCTGC TCGGACGAGG CCTGTTATAG CCAGAACCGC
CGCGCGGTCA CGGTGATTTC CGCCGGTCTG GGGGCCTGA
|
|---|
| Protein sequence | MTFSFLKPTL LVATLALAAC SQGGLNGDGA IGGAGGAGAG GIGSGGVGDP TSPVYFNEVV
GDRVLFAVDQ STLSSGAQSV LAGQAQWLLS NPEFTALIEG HADEQGTREY NLALGARRAA
AVREYLVSQG VPDARLRTIS YGKERPLQIC SDEACYSQNR RAVTVISAGL GA
|
|---|
| |