| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0954 |
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| Symbol | rpsD |
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| ID | 3933398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 913539 |
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| End bp | 914159 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637903302 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_508896 |
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| Protein GI | 89053445 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.86743 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACCAAAC GCACGTCTGC CAAGTACAAA ATTGACCGCC GGATGGGTGA AAACATCTGG
GGCCGTCCGA AATCCCCCGT CAATCGTCGT GAATATGGCC CCGGCCAGCA TGGTCAGCGC
CGCAAGGGCA AGCTGTCCGA TTTCGGTCTG CAGCTGCGCG CCAAGCAGAA GCTGAAAGGC
TATTACGGCG ACCTGACCGA GAAGCAGTTC CGTCGCATCT ATGCCGAAGC CGAGCGTCTG
CGCGGGGACA CCGGCGAATT CCTGATCGGT CTGCTGGAGC GTCGCCTCGA CGCTGTCGTC
TACCGTGCCA AGTTCGTGCC GACCGTGTTT GCTGCCCGTC AGTTCGTGAA CCACGGCCAC
GTCACCGTGA ACGGCCAGAA GGTCAACATC CCCTCCTACC GTGTGAAGGA AGGCGACGTG
ATCGCGGTGC GCGACAAGTC CAAGCAGCTG GCCGTTGTGC TGGAAGCCGT GGGTTTGGCC
GAGCGCGACG TGCCCGACTA CGTGGACGCC GACCATTCCA AGATGACAGC GACCTTCGTG
CGCACACCGG GCCTCAGCGA TGTGCCGTAT CCGGTCGTCA TGGAGCCGAA CCTCGTCGTG
GAATTCTACG CCAAGAACTG A
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| Protein sequence | MTKRTSAKYK IDRRMGENIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGL QLRAKQKLKG
YYGDLTEKQF RRIYAEAERL RGDTGEFLIG LLERRLDAVV YRAKFVPTVF AARQFVNHGH
VTVNGQKVNI PSYRVKEGDV IAVRDKSKQL AVVLEAVGLA ERDVPDYVDA DHSKMTATFV
RTPGLSDVPY PVVMEPNLVV EFYAKN
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