Gene Jann_0928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_0928 
Symbol 
ID3933372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp884085 
End bp885167 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content63% 
IMG OID637903276 
Productbasic membrane lipoprotein 
Protein accessionYP_508870 
Protein GI89053419 
COG category[R] General function prediction only 
COG ID[COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCA CCACCAAACT AATGACCAGT GCTGCGCTGG CCATGGGCCT GACGGGGGCG 
GCGATCGCGC AAGACGATCC GTTCCAGATA GGGTTTGTCT ATGTCGGGCC AATTGGCGAT
TACGGCTGGA CCTGGACCCA CGATCAGGGC CGTCTCGCCG TGGAAGAGGC GTTCGGCGAC
GATGTCGAAA CGGTCTTCGC GGAAAGTGTG CCAGAGGGCG CGGACGCCGA GCGCGTCATT
CAGAACATGG TTCTGGGCGG CGCGGACATG ATCTTCACCA CCTCCTTCGG CTATGGCGAA
GCGACAAATG CCGTCGCGGG CCAGTTCCCC GACGTCTATT TCGAACACGC CACCGGCTAC
CTGCGCGAAC ATGAAAACGT GTCGACCTAT TCGGCACGCT TCTATCAGGG CCGCGCCGTC
ATCGGCCACA TCGCGGGCCA GATGACCGAA TCCAACATCG TGGGCTACAT CGCATCCTAT
CCGATCCCCG AAGTGATCCG GGGCATCAAT GCCGCGTATC TGCACGCGCG CGAAGTGAAC
CCGGATGTCG AGTTCCGCGT GATCTGGGTC TACACATGGT TCGATCCGGC GGAAGAAGCC
TCTGCCGCCC AGGCCCTGAT TGATGCGGGT GCAGACGTGA TCATGCAGCA CACCGACAGC
ACCGCACCGC AGGCCGCGGC CCAGGAAGCG GGCAATGTCT ACACCTTCGG CCAGGCCTCT
GACATGATCC AGTTCGCGCC CACGCCGCGG ATCTCGTCGA TCATCGACAA TTGGGGCCCC
TACTACGTTC GCCGCGTCGG TGAGGCGATG GAGGGCACCT GGGCGCAATC CGACACCTGG
GAAGGCATGA CCGAAGGCAT GGTCGTGATC GGCGAGATGA CCGATGCGAT CCCGGAAGAG
GTGCGCGCCT CGGCGCTGGA CCTGATGGAA GGGATGCAGA GCGGCACGTA CCACCCCTTC
ACCGGCCCGA TCAACCGGCA GGACGGCACC GCATGGCTGG CCGATGGCGA GGTCGCCGAT
GACGGTACGC TTGCGGGCAT GGACTTCTAT GTGGAAGGGA TCACGGGCGA AATCCCGAAC
TGA
 
Protein sequence
MKLTTKLMTS AALAMGLTGA AIAQDDPFQI GFVYVGPIGD YGWTWTHDQG RLAVEEAFGD 
DVETVFAESV PEGADAERVI QNMVLGGADM IFTTSFGYGE ATNAVAGQFP DVYFEHATGY
LREHENVSTY SARFYQGRAV IGHIAGQMTE SNIVGYIASY PIPEVIRGIN AAYLHAREVN
PDVEFRVIWV YTWFDPAEEA SAAQALIDAG ADVIMQHTDS TAPQAAAQEA GNVYTFGQAS
DMIQFAPTPR ISSIIDNWGP YYVRRVGEAM EGTWAQSDTW EGMTEGMVVI GEMTDAIPEE
VRASALDLME GMQSGTYHPF TGPINRQDGT AWLADGEVAD DGTLAGMDFY VEGITGEIPN