Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0928 |
Symbol | |
ID | 3933372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 884085 |
End bp | 885167 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637903276 |
Product | basic membrane lipoprotein |
Protein accession | YP_508870 |
Protein GI | 89053419 |
COG category | [R] General function prediction only |
COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACTCA CCACCAAACT AATGACCAGT GCTGCGCTGG CCATGGGCCT GACGGGGGCG GCGATCGCGC AAGACGATCC GTTCCAGATA GGGTTTGTCT ATGTCGGGCC AATTGGCGAT TACGGCTGGA CCTGGACCCA CGATCAGGGC CGTCTCGCCG TGGAAGAGGC GTTCGGCGAC GATGTCGAAA CGGTCTTCGC GGAAAGTGTG CCAGAGGGCG CGGACGCCGA GCGCGTCATT CAGAACATGG TTCTGGGCGG CGCGGACATG ATCTTCACCA CCTCCTTCGG CTATGGCGAA GCGACAAATG CCGTCGCGGG CCAGTTCCCC GACGTCTATT TCGAACACGC CACCGGCTAC CTGCGCGAAC ATGAAAACGT GTCGACCTAT TCGGCACGCT TCTATCAGGG CCGCGCCGTC ATCGGCCACA TCGCGGGCCA GATGACCGAA TCCAACATCG TGGGCTACAT CGCATCCTAT CCGATCCCCG AAGTGATCCG GGGCATCAAT GCCGCGTATC TGCACGCGCG CGAAGTGAAC CCGGATGTCG AGTTCCGCGT GATCTGGGTC TACACATGGT TCGATCCGGC GGAAGAAGCC TCTGCCGCCC AGGCCCTGAT TGATGCGGGT GCAGACGTGA TCATGCAGCA CACCGACAGC ACCGCACCGC AGGCCGCGGC CCAGGAAGCG GGCAATGTCT ACACCTTCGG CCAGGCCTCT GACATGATCC AGTTCGCGCC CACGCCGCGG ATCTCGTCGA TCATCGACAA TTGGGGCCCC TACTACGTTC GCCGCGTCGG TGAGGCGATG GAGGGCACCT GGGCGCAATC CGACACCTGG GAAGGCATGA CCGAAGGCAT GGTCGTGATC GGCGAGATGA CCGATGCGAT CCCGGAAGAG GTGCGCGCCT CGGCGCTGGA CCTGATGGAA GGGATGCAGA GCGGCACGTA CCACCCCTTC ACCGGCCCGA TCAACCGGCA GGACGGCACC GCATGGCTGG CCGATGGCGA GGTCGCCGAT GACGGTACGC TTGCGGGCAT GGACTTCTAT GTGGAAGGGA TCACGGGCGA AATCCCGAAC TGA
|
Protein sequence | MKLTTKLMTS AALAMGLTGA AIAQDDPFQI GFVYVGPIGD YGWTWTHDQG RLAVEEAFGD DVETVFAESV PEGADAERVI QNMVLGGADM IFTTSFGYGE ATNAVAGQFP DVYFEHATGY LREHENVSTY SARFYQGRAV IGHIAGQMTE SNIVGYIASY PIPEVIRGIN AAYLHAREVN PDVEFRVIWV YTWFDPAEEA SAAQALIDAG ADVIMQHTDS TAPQAAAQEA GNVYTFGQAS DMIQFAPTPR ISSIIDNWGP YYVRRVGEAM EGTWAQSDTW EGMTEGMVVI GEMTDAIPEE VRASALDLME GMQSGTYHPF TGPINRQDGT AWLADGEVAD DGTLAGMDFY VEGITGEIPN
|
| |