Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0890 |
Symbol | |
ID | 3933334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 844394 |
End bp | 845560 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637903238 |
Product | major facilitator transporter |
Protein accession | YP_508832 |
Protein GI | 89053381 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0309289 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGTC CCATCCTTGC ATTGGCAGCC GCCGGGTTTG CCGTTGTCAC GACCGAGTTC GTGATCATCG GTGTCCTGCC ACGGCTCGCT GCTGATCTTG GCGTCACCAT CGCCCAAGCT GGTCTTCTGG CAACCATCTT CGCCTTCACC GTCGCAATCG CGGCTCCCTT CCTGACCGCT TTGGTCGCAA AGATCGAACG GAAAAAGCTG TTCGCAGCCC TACTCGCGAT GATCGCCATA TCGAACCTTC TGACGGCCAT CGCACCCACA TTTGAGATCT TTGCGGCGGC GCGGGTGGTC GGAGCTTTGG CCTTGCCGGT CTTCTGGGCG GTCGGCACCG CATCGGCCGC GCAACTTGGC GGGCCAGAAG GCGGCGGTAA ATCCGTGGCG ATCCTCTATG CCAGCATCTC GGCCGGTACG GTGATCGGCA TCCCGCTCGG AACGCTGCTG GCTGACCTGA TGGGCTGGCG TGTCATGTTT GGCGCGATCG GCGTTCTGGC TGCCATCATG TCGCTGGCGC TGCTCGCCTT CTTCCCCACC ACACCGCCCG ACGCGGCACC TTCGTTGCTG AAACAAGCCT CCATCCTGAA GCGTGGTTCG TTCCTGGCGC ATCTCGTGCT GACGGCCTTT GCCTTCACGT CGATGTTCGT GGCCTACACT TATCTGGCTG ATATCCTGCA AACGCTGGCT TCTTTGCCAA CAAGTCAGGT GGCCTGGGTG CTGATGGGCT TCGGCATTGT CGGCCTCTTC GGCAACTGGC TGGCTGGCCA GTATGTTGAT CGGAGCCCAA TGGGTGTGAC GGTCGTGTCT CTGGCCGCAT TGTCCATTGC ATCCTTCGCG ACGGTTGCTC TGACCGGTCA AGGCATCCTG TTCCTGATCC CGCTGGCCAT CTGGGGCGCG GCGCAATCGG CTGGCTTCAT CGGGAACCAG TTGCGTGTCA TGAAAGAAGC TCCTGAAGCG CAAGAGTTTG CATCTGCCCT CAGCGTGACC ATCGCGCGGG TTGGAATTGG GCTTGGTGCG TTGATCGGCG GCAAGGTGAT CGACGCGCGA GGTCTCGCAG CCCTTGGATC AGAGAATGCA CTGATCGGCA TAGCAGGTCT CGTCGTCGCG ATGCTCATTA TCATCGGCGT CCGCAGAGTG AGGTGGCATT CCCTGCCAGC AGAATAG
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Protein sequence | MKRPILALAA AGFAVVTTEF VIIGVLPRLA ADLGVTIAQA GLLATIFAFT VAIAAPFLTA LVAKIERKKL FAALLAMIAI SNLLTAIAPT FEIFAAARVV GALALPVFWA VGTASAAQLG GPEGGGKSVA ILYASISAGT VIGIPLGTLL ADLMGWRVMF GAIGVLAAIM SLALLAFFPT TPPDAAPSLL KQASILKRGS FLAHLVLTAF AFTSMFVAYT YLADILQTLA SLPTSQVAWV LMGFGIVGLF GNWLAGQYVD RSPMGVTVVS LAALSIASFA TVALTGQGIL FLIPLAIWGA AQSAGFIGNQ LRVMKEAPEA QEFASALSVT IARVGIGLGA LIGGKVIDAR GLAALGSENA LIGIAGLVVA MLIIIGVRRV RWHSLPAE
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