Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0880 |
Symbol | |
ID | 3933324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 835022 |
End bp | 836233 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637903228 |
Product | ROK |
Protein accession | YP_508822 |
Protein GI | 89053371 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.185175 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0528281 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATTGGAT CAAGAAGCCT TTCTCGACAG TTTTCACGTA GCGCCGTGGT TCAGGCGATT GCGTCCGCGG GCCCGATTTC GAGGGCGAGC TTGGCAAAAC AGGTTGGTCT TTCCAAACAG ACAGTTTCTG AAATCGTATC CGGCCTCGAG AGTGATGGGT GGATTATCGA AACCGGTCGG ACCGCTGGTC ACGTCGGGCG ATCAGCAACG ACCTACGAAT TGGTCCCGGA CGCGGCATTT GTGTGCGGCG TTGACCTCGG TGGCACAAAG GTCCGCGCCG CGATCATCGA TCTGACCTGC ACCGTCGTGG CCGAGTTGAC CGAACCGACT GATCCGCAAG GTGGCACCGA TCTTGTACAA CAAATCGGTC AGCTATGCCG GAATGCTGCG CTACAGGCAT GTGTGGATTG GTCTAGGGTT ATGTTTGCGA CCATTGGCGT CCCCGGTGTC CCGGATCAGA AGTCGGGATC GGTGAAGATG GCCCCGAATA TCGACAAGAT TGGCGACATG GATTTCGCCG GAGCCTTGGA GGCGGAGTTT GGCTTCGGTG TTCAGGTCGA AAACGACGTG AACCTCGCCG CGATTGGTGA GCAGTGGAGT GGCTGCGCGT CCGAAGTCGA TAATATGGCA TTTGTGTCGC TCGGCACAGG CATTGGCGCA GGGATTATCG TGGGTGGGCA AATCATACGT GGCGCCATGG GGGCGGCGGG AGAACTTGGC TTTCTGCCGT TCGGGGCGGA CCCTTTCGAG CCTAGCTCAC TCAGAGCGGG CGCCCTGGAG CGTCAGGCCG GTTCTTTTGG CATGATAGGC CGATATTCGG AACTTGCGGG CAAAGACGTC CAGGTCAAAG AACTGTTCGA TCTCGCACAG GCCGGAGATG AACACGCCGA CATTGTGCTG GAAGAGACTG CCCGGCTGGT CGCTCGTTTG ATTGCAACAA TCGGCGCAGT TGTCGATCCG TCGATGGTTG TCCTAGGCGG GTCAATCGGG CAGCGCAGGG AGCTGCAGGA GCGTATCGAA GTTGCGCTTG CGGACTGTTT TCCAAACCCG ATCGACATCA GGCGCTCGGC CCTTGGCAAT CATGCGGCCC TCGTCGGCGG TGCAGCGGTC GGGTTGGCCC ATCTGCATCA CACAATTTTT GCAGCAGGTC TGAACAATGT GGAGATCGCG CTTCCGCAGC TCTCGGCGCC GGCATGGAGG GGGGTTGCAT GA
|
Protein sequence | MIGSRSLSRQ FSRSAVVQAI ASAGPISRAS LAKQVGLSKQ TVSEIVSGLE SDGWIIETGR TAGHVGRSAT TYELVPDAAF VCGVDLGGTK VRAAIIDLTC TVVAELTEPT DPQGGTDLVQ QIGQLCRNAA LQACVDWSRV MFATIGVPGV PDQKSGSVKM APNIDKIGDM DFAGALEAEF GFGVQVENDV NLAAIGEQWS GCASEVDNMA FVSLGTGIGA GIIVGGQIIR GAMGAAGELG FLPFGADPFE PSSLRAGALE RQAGSFGMIG RYSELAGKDV QVKELFDLAQ AGDEHADIVL EETARLVARL IATIGAVVDP SMVVLGGSIG QRRELQERIE VALADCFPNP IDIRRSALGN HAALVGGAAV GLAHLHHTIF AAGLNNVEIA LPQLSAPAWR GVA
|
| |