| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0855 |
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| Symbol | |
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| ID | 3933299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 810841 |
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| End bp | 812544 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637903203 |
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| Product | spermidine synthase |
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| Protein accession | YP_508797 |
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| Protein GI | 89053346 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00481823 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.101312 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCGCC TACAAGATCA TCGACATCGT GACACCCTTC CCGATCATCA AGGAGATCGA
GGAGGATCAG AACACGTCCC TGGCGGTCCT GATCGGGTCG GTCTTCCTGT CGATGTCGAT
CATCATCGCG GCTGTTATCC TGTCGTGAGC GAGGCCACAG GGGGTCGTGC CGAGCTGACC
CCAAAGGTTG CCTGGCTGCT GGCGGCCACG TTCATCGTGG CTGTCGCGGG CCTGATCTAT
GAGCTGATCG CGGCAACCAT TTCCTCCTAT CTGCTTGGCG ATTCAATTCG TCAGTTTTCG
TTCGTTATCG GCGTGTTCCT TAGCGCGATG GGCGTGGGGG CCTGGGCCTC GCGGTTCGTG
GGCGACGCGT TGTCGGGGTT TGTCCGCGCG CAGATCGCCC TTGGGGCCAT TGGCGGCGCG
CTGGGGCCGG TGCTGTTCTT CGCCTATGCG ATTTACGGCA ATGTGGGCGT GCCTTTGTAC
GGTGGGTTGG TCGCCATTGG CATCCTGTCG GGGATGGAGA TCCCCCTGAT CTCCCGCGTG
ATGAAAGAGA TCGGCGCGGC GGAATTCCGG TTCGAGAATG TGCTGACCGC CGACTACATC
GGCGCTTTGG CCGCCTCGCT GGCGTTTCCG CTGCTGATCG TGCCGAACTT GCCGCTGATG
TCTGCGTCGC TGGCCTTTGG CACGCTCAAC CTGCTGGTCG CAGGGTTTTC GCTGTACCTG
TTCCGGGACC GCCTTGGTCG GGGCCTTTGG CTGCCTTGGG GCGCACTCCT CCTCGCTTCG
CTCCTCGCAT TCGTGATGAG TGAGCGGATG GTCTCTGCCG TCGATGCGCG GCTGTTTCAG
GACGAGGTGA TCTTCTCAGA AACGACCGCC TACCAGAGTA TCGTCATCAC CCGGTTCGAC
GACCGCTACC GGCTGTTTCT GGATCATTCG ATCCAGTTCG ACAGTCTTGA TGAGCACCGC
TACCACGAGG CGCTGGTGCA TCCCGCCATG GGTCTCGTGC CCGATGCGCG ACGCGTATTG
GTGCTGGGGG GCGGTGACGG CATGGCCGTG CGGGAGGTGT TGCGCCACGA GGGTGTGGAG
CATGTGACGC TGGTCGATCT GGACCCCCGC GTGACGGAGT TATTTGCCAC GAACCCCGAC
CTTGTGGCTT TGAACGGCGG TGCGCTTGCG GATGCGCGGG TGGAGGTGGT GAACACCGAC
GCCTGGGTCT GGGCGGCGGA GGCAGACGGT GTATACGACG TCATCATCGC CGATCTGCCG
GACCCGAAAA GCATCGCCCT GTCCAAGCTC TACTCGGTGG AATTCTATGG CATGCTGGTG
GAACGCTTGG CGGGCCAGGG GCTTCTGGTG ACACAAGCGG GCTCCCCCAC CTTCGCGACG
GAGGCGTTCT GGATCACGGA AGCGACCCTG GCCGCGACAC GGAGCCCGGC AGACCCCGGC
GGGACGCTGC AAACCATCGC CTACCAGACC TATTTGCCAA GCTTCGGGAA CTGGGGCTTC
GTCATGGCCG GGCCGTTGCT GCCCAATGAC GCGCGAACGC CGGAGTTGCC CGAAGGATTG
CGGCATATGA CACCTGAGCT GTGGACCGCA TCGCAAGTCT TCGGCGTGGA CCAGTCGCGC
CCGGATGAGG TGCCGGTCAA TACGATCCAG GGTCACCCGC TGGCGGCCGC CTATCAACGC
GGGTGGGAGT TCTGGTTCCG CTAA
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| Protein sequence | MDRLQDHRHR DTLPDHQGDR GGSEHVPGGP DRVGLPVDVD HHRGCYPVVS EATGGRAELT
PKVAWLLAAT FIVAVAGLIY ELIAATISSY LLGDSIRQFS FVIGVFLSAM GVGAWASRFV
GDALSGFVRA QIALGAIGGA LGPVLFFAYA IYGNVGVPLY GGLVAIGILS GMEIPLISRV
MKEIGAAEFR FENVLTADYI GALAASLAFP LLIVPNLPLM SASLAFGTLN LLVAGFSLYL
FRDRLGRGLW LPWGALLLAS LLAFVMSERM VSAVDARLFQ DEVIFSETTA YQSIVITRFD
DRYRLFLDHS IQFDSLDEHR YHEALVHPAM GLVPDARRVL VLGGGDGMAV REVLRHEGVE
HVTLVDLDPR VTELFATNPD LVALNGGALA DARVEVVNTD AWVWAAEADG VYDVIIADLP
DPKSIALSKL YSVEFYGMLV ERLAGQGLLV TQAGSPTFAT EAFWITEATL AATRSPADPG
GTLQTIAYQT YLPSFGNWGF VMAGPLLPND ARTPELPEGL RHMTPELWTA SQVFGVDQSR
PDEVPVNTIQ GHPLAAAYQR GWEFWFR
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