| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0809 |
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| Symbol | sdhA |
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| ID | 3933252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 768820 |
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| End bp | 770640 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637903156 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_508751 |
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| Protein GI | 89053300 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.76713 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGATA CCACTTCCCC CGCCTACGCC CTGACCCACC ACACCTATGA CGTAGTGGTC
GTGGGTGCCG GTGGCTCTGG CTTGCGGGCA ACGCTTGGCA TGGCGGAACA AGGCCTGAAG
ACGGCCTGTA TCTCCAAGGT GTTCCCGACC CGCTCCCACA CCGTGGCCGC GCAAGGCGGC
ATCGCGGCGA GCCTTGGCAA CATGGGTCCG GACCATTGGC ACTGGCACAT GTACGACACC
GTGAAGGGCT CGGACTGGTT GGGTGACACG GACGCGATGG AATACCTCGC GCGCGAAGCC
CCCAAGGCGG TTTATGAGCT GGAGCATTAC GGCGTGCCGT TTTCCCGCAC CGAAGAAGGC
AAGATCTACC AGCGCCCCTT CGGCGGCCAC ACCACCGAAT TCGGCGAAGG CCCCCCCGTG
CAGCGCACCT GTGCCGCCGC CGACCGGACG GGGCACGCAA TCCTGCACAC GCTCTATGGC
CAATCCCTGA AGAACGACGC GGAATTCTTC ATCGAATATT TCGCCACTGA TCTGTTGATG
GATGATGAAG GCCAATGCGT CGGCGTCGTG GCCTGGAAAC TGGACGACGG CACCATGCAC
GTCTTCCACT CCAAGATGAC CGTTCTGGCG ACGGGCGGTT ATGGTCGTGC TTACTTCAGC
GCCACAAGCG CCCATACCTG CACCGGCGAC GGCGGCGGCA TGGTCGCTCG GGCGGGTCTG
CCGCTCCAAG ACATGGAATT CGTACAATTT CACCCCACCG GCATCTACGG CGCCGGCTGC
CTGATCACCG AGGGCGCGCG GGGCGAAGGC GGCTATCTGA CGAACTCCGA GGGCGAGCGA
TTCATGGAAC GCTATGCGCC CACCTACAAG GACCTCGCGT CGCGCGATGT GGTGTCGCGT
TGCATGACGA TGGAGATCCG CGACGGCCGC GGCGTTGGCG AGAATGGGGA TCACATCCAC
CTGCACCTCA ACCACCTGCC GAAGGAAACG CTGGACCTGC GCCTGCCGGG GATCTCTGAG
TCCGCGCGGA TATTTGCGGG GGTCGACCTG ACGAAGGAAC CGATCCCGGT TCTGCCGACG
GTCCACTACA ACATGGGCGG TATCCCCACG AATTATCTGG GGGAGGTGCT GAACCCCACC
GCCGATGATC CGATGAAGAC CGTCCCCGGC CTGATGGCTG TGGGCGAGGC GGGCTGCGCA
AGCGTTCATG GGGCGAACCG TCTGGGCTCC AACTCGCTGA TCGACCTAGT CGTCTTTGGC
CGCGCCGCCG CGATCAAGGC GGGTGAAATC GTCGATCCCA ACGCCAAGAA TCCCGACGTG
CCCCAGCACC AGATCGACAA GGCGCTGGCG CGGTTTGACG ACGTGCGCCA TGCCGATGGC
GGCACACCCA CGGCGGAATT GCGGTTGGAG ATGCAGAAGA CCATGCAGGC CGATGCTGCC
GTCTTCCGCA CCGACAAGAC ACTCGCCGAG GGGCTGGAAA AGATGACCGG TGTGGCGGGC
AAGATGGACG ATGTGGCCGT CACCGACCGG TCGATGATCT GGAACTCCGA CCTGATGGAG
ACGCTGGAGC TGACCAACCT GATGCCCAAC GCTCTGGCCA CGATTGCAGG TGCAGAGGCG
CGCAAGGAAA GCCGGGGTGC CCATGCCCAT GAGGATTATC CAGACCGTGA CGACGTAGAC
TGGCGCAAGC ATTCGCTGGC GATGGTCGAT GGCAACAAGG TCGACCTCAG CTACCGTGAC
GTTGGCCTGT CCCCACTGAT CGGCCATAAT GAGGGCGGGA TCGACATGGA CAAGATCAAG
CCCAAGGCGC GGGTCTATTG A
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| Protein sequence | MKDTTSPAYA LTHHTYDVVV VGAGGSGLRA TLGMAEQGLK TACISKVFPT RSHTVAAQGG
IAASLGNMGP DHWHWHMYDT VKGSDWLGDT DAMEYLAREA PKAVYELEHY GVPFSRTEEG
KIYQRPFGGH TTEFGEGPPV QRTCAAADRT GHAILHTLYG QSLKNDAEFF IEYFATDLLM
DDEGQCVGVV AWKLDDGTMH VFHSKMTVLA TGGYGRAYFS ATSAHTCTGD GGGMVARAGL
PLQDMEFVQF HPTGIYGAGC LITEGARGEG GYLTNSEGER FMERYAPTYK DLASRDVVSR
CMTMEIRDGR GVGENGDHIH LHLNHLPKET LDLRLPGISE SARIFAGVDL TKEPIPVLPT
VHYNMGGIPT NYLGEVLNPT ADDPMKTVPG LMAVGEAGCA SVHGANRLGS NSLIDLVVFG
RAAAIKAGEI VDPNAKNPDV PQHQIDKALA RFDDVRHADG GTPTAELRLE MQKTMQADAA
VFRTDKTLAE GLEKMTGVAG KMDDVAVTDR SMIWNSDLME TLELTNLMPN ALATIAGAEA
RKESRGAHAH EDYPDRDDVD WRKHSLAMVD GNKVDLSYRD VGLSPLIGHN EGGIDMDKIK
PKARVY
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