| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0757 |
|---|
| Symbol | |
|---|
| ID | 3933200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 720660 |
|---|
| End bp | 722165 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637903104 |
|---|
| Product | signal recognition particle subunit FFH/SRP54 (srp54) |
|---|
| Protein accession | YP_508699 |
|---|
| Protein GI | 89053248 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAGA ACCTATCCGA GCGCCTTGGT GGCGTCTTTG ACCGCCTCAC CAAACAGGGC
GCGCTGTCGG AGGATGACGT TCGCACCGCG CTCCGCGAAG TGCGGGTCGC GCTGTTGGAG
GCGGACGTCT CACTGCCCGT CGCACGGACC TTCATCAAGA ACGTGGAAAA GAAGGCGACG
GGGGCTGCCG TCACCAAGTC GATCACCCCC GGCCAGCAGG TCATCAAGAT CGTCCATGAC
GAATTGATCG CCACCCTGCG CGGCGCGGAT GATCCCGGCG TTTTGAAAAT CGACAACCCG
CCCGCGCCGA TCCTGATGGT CGGCCTTCAG GGCTCCGGTA AGACGACGAC GACGGCGAAA
CTGGCCAAGC GGTTGAAGGA CCGTGAGGGC AAGAAGGTGC TTATGGCGTC TTTGGACACC
AACCGTCCGG CGGCGATGGA GCAGTTGGCG ATCCTCGGCA CGCAGATCGG CGTGGACACC
CTGCCCATCG TGCCCGGTGA AGATCCCGTT CAGATCGCCA AGCGGGCGAA GACGCAGGCG
TCTCTGGCCG GATATGACGT CTATATGCTC GACACTGCGG GCCGGTTGCA CATCGACGCA
GAGCTGATCG CCCAGGCCGC TGCCGTACGT GACGTGGCCA ACCCGCGTGA GACGCTGCTG
GTCGTGGACG GCCTGACAGG TCAGGACGCG GTCAATGTCG CGACGGAATT CGATGACAAG
ATCGGCGTCT CGGGCGTTGT CCTGACCCGG ATGGACGGCG ACGGGCGCGG CGGTGCGGCG
CTCTCGATGC GAGAGATCAC TGGCAAGCCC ATCCGCTTCG TCGGTCTCGG CGAGAAGATG
GACGCGATCG AGACGTTCGA GCCCGAGCGC ATCGCGGGCC GCATCCTTGG CATGGGCGAC
ATCGTGGCCC TGGTCGAGAA GGCGCAGGAG ACGCTGGAGG CCGAACAGGC CGAGCGCATG
ATGAAGCGGT TCCAGAAGGG TCAGTTCAAC ATGAACGACC TGAAGGGCCA GCTTGAGCAG
ATGCAGAAGA TGGGCGGCAT GCAAGGCATG ATGGGCATGA TGCCCGGCAT GGCCAAGATG
TCAAAACAGA TCGAAGAGGC CGGTTTTGAC GACAAGGTTA TTGTGCGTCA GGTGGCGCTG
ATCCAGTCGA TGACCAAAAA GGAACGCGCC AATCCGGGCA TGTTGCAGGC GTCCCGCAAG
AAGCGCATTG CCAAGGGCGC GGGGCAGGAT GTGTCTGACC TCAATAAGCT GCTGAAGATG
CACCGCCAGA TGGCGGATGC GATGAAGAAG ATGGGCAAAA TGGGCAAGAA AGGCCTGATG
CGGGGCGGCC TCGGCGCGCT GATGGGCAAG GGCGGCGGTA TGCCGGCTGG CATGGATGCG
GCTGGCATGG GTGGCATGGA CCCCAAGGCG CTGGAACGCG CGGCCAAGCA GATGGGTGCG
GGCGGCGGCG GGCTGCCCGG CTTGGGCGGC ATGGGTGATC TGAGCGGGTT GGGTAAGAAG
AAGTGA
|
|---|
| Protein sequence | MFENLSERLG GVFDRLTKQG ALSEDDVRTA LREVRVALLE ADVSLPVART FIKNVEKKAT
GAAVTKSITP GQQVIKIVHD ELIATLRGAD DPGVLKIDNP PAPILMVGLQ GSGKTTTTAK
LAKRLKDREG KKVLMASLDT NRPAAMEQLA ILGTQIGVDT LPIVPGEDPV QIAKRAKTQA
SLAGYDVYML DTAGRLHIDA ELIAQAAAVR DVANPRETLL VVDGLTGQDA VNVATEFDDK
IGVSGVVLTR MDGDGRGGAA LSMREITGKP IRFVGLGEKM DAIETFEPER IAGRILGMGD
IVALVEKAQE TLEAEQAERM MKRFQKGQFN MNDLKGQLEQ MQKMGGMQGM MGMMPGMAKM
SKQIEEAGFD DKVIVRQVAL IQSMTKKERA NPGMLQASRK KRIAKGAGQD VSDLNKLLKM
HRQMADAMKK MGKMGKKGLM RGGLGALMGK GGGMPAGMDA AGMGGMDPKA LERAAKQMGA
GGGGLPGLGG MGDLSGLGKK K
|
|---|
| |