| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0748 |
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| Symbol | rimM |
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| ID | 3933191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 716245 |
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| End bp | 716808 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637903095 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_508690 |
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| Protein GI | 89053239 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCAACC CGGACCACAC CTGCGTCGGC GCGATCTCCG GCTCCTTTGG CGTCCGGGGC
GAAGTGCGTT TGAAAAGCTT CTGCGCAGAG CCATCGGACA TCGGCTCCTA CGGCCCCCTG
TCCACGGAAG ACGGAGCGCA GACCTACACC ATTACCCTCA CGCGGCCCGT GAAAGCGGGC
TACGCGGCGA TGCTCTCGGG CGTCGCCACG AAGGAGGATG CTGACGCCCT GCGCGGCACC
CGCCTTTATG CGCCCCGCTC TGCCCTGCCC TCACTGCCCG ATGACGAGTT CTACCACGCC
GACCTTGTGG GCCTCACGGT CCTCGACACA GGCGGAGAGG TCATCGGCAC AGTGGCGTCT
GTGGCCAACC ACGGCGCGGG CGACATTCTG GAACTCAGCG GCCCGGGCCT GCCGTCCGGC
CTCCTGATCC CCTTCACGCT GGCCGTCGTG CCCACGGTAG ATATCGCCGC GGGCCGTGTG
ATCGTCGATA TGCCCGATGG TCTTATCGGC GGCGATAAAC CGGATACATC CGATACCGCG
CCTCTGGGCC AGGACTTCGA CTAA
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| Protein sequence | MTNPDHTCVG AISGSFGVRG EVRLKSFCAE PSDIGSYGPL STEDGAQTYT ITLTRPVKAG
YAAMLSGVAT KEDADALRGT RLYAPRSALP SLPDDEFYHA DLVGLTVLDT GGEVIGTVAS
VANHGAGDIL ELSGPGLPSG LLIPFTLAVV PTVDIAAGRV IVDMPDGLIG GDKPDTSDTA
PLGQDFD
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