| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0721 |
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| Symbol | rpsA |
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| ID | 3933164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 690962 |
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| End bp | 692638 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637903068 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_508663 |
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| Protein GI | 89053212 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0686992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAATA ACATGATGGA GGAATTCGAA GCCCTCCTGA ACGAAAGCTT CGAAATTGAC
ACGCCCGACG AGGGGTCTGT TGTCAAAGGC AAGGTCATCG CGATTGAAGC AGGCCAGGCC
ATCATCGACG TCGGCTACAA GATGGAAGGC CGTGTCGAGC TTAAAGAATT CGCGAATCCC
GGTGAAGCGC CCTCGATCGA GGTCGGTGAC GAAGTCGAAG TTTACCTTCG CAACGTCGAG
AACGCCCGTG GCGAGGCCGT GCTGTCGCAC GAGATGGCCC GCCGTGAGGC CGCCTGGGAT
CGTCTGGAAA AGGCATATGC CGCGGAAGAG CGTGTCGAAG GCGCGATCTT TGGCCGCGTG
AAGGGTGGTT TCACCGTGGA TCTGGGGGGC GCGGTTGCGT TCCTGCCCGG TTCTCAGGTT
GACGTCCGTC CCGTGCGCGA TGCGGGCCCG CTGATGGGCC TCAAGCAGCC GTTCCAGATC
CTGAAGATGG ACCGTCGCCG TGGCAACATC GTTGTCTCGC GCCGTGCGAT CCTGGAAGAA
TCCCGCGCCG AGCAGCGCGC CGAGGTCATC GGCAAGCTGA ACGAAGGCGA CGTGGTCGAC
GGCGTGGTCA AGAACATCAC CGAATACGGC GCATTCGTCG ATCTGGGCGG TGTGGACGGC
CTGCTGCACG TCACCGACAT GGCCTGGCGC CGCGTCAACG ACCCCAAAGA GATCCTCACC
ATTGGCGAGA CCGTCAAAGT GCAGGTGATC AAGGTCAACA AAGAGACGCA CCGCATCAGC
CTTGGCATGA AGCAGTTGCA GGACGACCCA TGGGATGCTG TCGCGGCCAA ATACGCGCTG
GACACCGTTC ACACGGGCCG CGTGACGAAC ATCACCGATT ATGGTGCGTT TGTTGAGCTG
GAAGCCGGTG TTGAAGGCCT GGTCCACGTA TCCGAGATGT CCTGGACGAA GAAGAACGTC
CATCCGGGCA AGATCGTCTC CACCTCCCAG GAAGTGGAAG TGATGGTGCT GGAGATCGAC
ACCGTGAAGC GTCGCGTGTC CCTTGGCCTC AAGCAGACCA TGCGCAACCC ATGGGAAGTG
TTCGCCGAGA GCCACCCCGA GGGCACGCAG GTTGAAGGTG AAGTCAAGAA CATCACCGAG
TTCGGTCTGT TCGTGGGTCT TGAAGGCGAG ATCGACGGCA TGGTCCACCT GTCCGACCTG
ACATGGGAAG GCCGTGGCGA AGACATGATC GGTGAGTTCC GCAAGGGCGA CATCGTGAAG
GCCGTCGTCA CCGAGGTCGA CACCGACAAG GAGCGTATCA GCTTGTCCAT CAAGGCGGTC
GACGGCGATC CCTTCGGCGA GACCATCGAG GGCGTGAAGC GCGGCTCCAT CATCACCGTT
GAAGTGACGG CGATTGAAGA TGGCGGCATT GAGGTGGACT ACGAGGGCAT GAAGTCCTTC
ATCCGCCGCT CTGATCTGTC CCGTGATCGC TCCGAGCAGC GCCCTGAGCG CTTCCAGGTC
GGCGACAAGC TGGACGTCCG GGTCACCAAC ATCGACGCGA AGTCGCGCCG TCTGGGTCTG
TCGATCAAGG CGCGTGAGAT CGCGGAAGAG AAAGAGGCCG TGGAACAGTT CGGCTCCTCC
GACTCCGGTG CGTCGTTGGG CGATATCCTT GGCGCGGCGC TGAAGCAGGA CGACTAA
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| Protein sequence | MANNMMEEFE ALLNESFEID TPDEGSVVKG KVIAIEAGQA IIDVGYKMEG RVELKEFANP
GEAPSIEVGD EVEVYLRNVE NARGEAVLSH EMARREAAWD RLEKAYAAEE RVEGAIFGRV
KGGFTVDLGG AVAFLPGSQV DVRPVRDAGP LMGLKQPFQI LKMDRRRGNI VVSRRAILEE
SRAEQRAEVI GKLNEGDVVD GVVKNITEYG AFVDLGGVDG LLHVTDMAWR RVNDPKEILT
IGETVKVQVI KVNKETHRIS LGMKQLQDDP WDAVAAKYAL DTVHTGRVTN ITDYGAFVEL
EAGVEGLVHV SEMSWTKKNV HPGKIVSTSQ EVEVMVLEID TVKRRVSLGL KQTMRNPWEV
FAESHPEGTQ VEGEVKNITE FGLFVGLEGE IDGMVHLSDL TWEGRGEDMI GEFRKGDIVK
AVVTEVDTDK ERISLSIKAV DGDPFGETIE GVKRGSIITV EVTAIEDGGI EVDYEGMKSF
IRRSDLSRDR SEQRPERFQV GDKLDVRVTN IDAKSRRLGL SIKAREIAEE KEAVEQFGSS
DSGASLGDIL GAALKQDD
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