| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0686 |
|---|
| Symbol | |
|---|
| ID | 3933129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 658998 |
|---|
| End bp | 661064 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637903033 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_508628 |
|---|
| Protein GI | 89053177 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5426] Uncharacterized membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.503271 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.203205 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACC AGATCCTCTT TGATCCGCTG CTGGACTGGC CCTTGCTCTA TGGACTGGGG
GCGGCGCTGG TTCTGATCAT CGCCCTGTCG ATCTGGCGTG GCCTGTCGGG TTGGCCGTAT
CGCCTTCTGG CGGGCGCGGC GCTTCTGGCC GCGTTGATCA ACCCGTCGCT CCAGACGGAA
GACCGCGAAC CCCTGTCGGA TATCGTGCTG CTGGTCGTCG ACGAAAGCGC CAGCCAGCGG
ATATCCGACC GTCCTTCGCA AACGGCGGAC GCATTGGAGG CGTTGGAGGC GGAGGTTGAG
GCGTTGGGCA TGGAAACCCG CGTGGCCCGT GTGGGCGATG CGGACGACAA TTCCGGCACA
CTTCTGATGA CGGAATTGCA GCGCCTGATG GCGGAAGAGC CGCGCGCACG GATAGCGGGG
GCGTTGATCA TCACCGATGG ACGGCTCCAT GACCCGGAGC TGGTGCCGGA TATGCCCGCG
CCGATCCACG CCCTGATCAC GGGGCTTGAG ACGGATTGGG ACCGCCGCCT GGTGATTGAG
ACCGCGCCTG CCTTCGGTAT CATTGGCGAG GAATTGCTGC TCACGATCCG GCTGGAGGAC
CAGGGGGCGG TGCCCGCGGG CCTTGAGGGA CGCTCGCAGA TCGTGATCGC CGTCGATGGC
GGGCCGCCGC AGACCTACGT GGTGCCGGTC GGCGAAAGTC TGGAATTGCC CCTGACGCTG
GAACATGCCG GTCAAAACGT GATCCAGTTC ACCGTGCCGG AGGCGGAGGG CGAGTTGACG
ACGCGCAACA ACGCCGCCGT CGTGCAGATC AACGGCATCC GCGACCGCCT GCGCGTGTTG
CTGGTCTCGG GTGAGCCGCA TCCCGGTCAA CGCACGTGGC GCAACCTGCT GAAATCCGAT
CCGTCGGTGG ATCTGGTCCA CTTCACCATC CTGCGCCCGC CCGACCGCCA GGATGGTGTG
CCCGTCGGCG AGTTGTCCCT GATCGCCTTC CCCACGCGGG AATTGTTCAT GGAGGCCGTG
GATGAATTCG ACCTGATCAT CTTCGACCGC TACCAGCGCC GGGGCATCCT GCCGATGGTC
TATATCGACA ATATCCGCCG CTACGTGGAA GACGGTGGCG CGCTGTTGTT GGCTGCGGGG
CCGGATTTTG CGGGGGCCTC GTCGCTCTAC CGCACGCCGC TCTCGGACAT TCTGCCGGGC
CGCCCCACGG CCCGCGTGAT TGAGGAGCCA TATGTGCCGC TGATCAGCGA ATTGGGCGCG
CGGCATCCGG TGACGACGGG TCTGGAAGGG GAGCATACGC CGCTGCCGGG CAGTGACGAT
CCCTGGGGCC GCTGGCTGCG CCAGATCGAG TTGACAGAAC AGGGTGGCCA GACGGTCATG
GAAGGGGCAG GTGGCGCGCC GCTCCTGATG TTGGATCGTG TCGGGCAGGG GCGCGTGGCG
CTGCTGGCCT CGGATCATGC CTGGCTCTGG GATCGTGGGT ATGAAGGCGG CGGGCCGCAA
CTGGAATTGC TGCGCCGCCT GGCCCATTGG ATGATGGGCG AGCCCGACCT TGAGGAAGAG
GCGCTGGTGG CCGATGTCGA TGGCCAGACC ATCACGATCA CCCGCCGGAC GCTGGCCGAT
GAGGTAGGCT CCGTCATCGT CACCACACCC GATGGTGAGC AGTTGGAAGT GATGCTGGAA
GAGACCGCAC CGGGGGCCTT CACGGCCCAG ATCGAGGGCT TGGAGCAGGG GCTTTACCGT
TTGGTGGAAA GCGATCTGGA GCGCGTTATT GCCCTAGGAC CCGCCGCGCC GCGCGAATTT
GAGGTCACGA TTGCCGGGGC CGAGCGGATT GACCCGCTGC TGGACGCGGA AGGCGGACGC
TCGGTGCGTC TGGAAGATGG CCTGCCGGAC CTGCGCCGCG TGTCTGAGGG ACGCACGGCC
CATGGGCGCG GATGGCTGGG GCTGACCACG CGGGAGGCTT ACGTCACCAC GGACGTGACC
GTGACTCCGT TCATTCAGGC CTGGGTGTTC CTGCTTCTGG CGGCGGGTCT GATGCTGGCA
GGCTGGTTGC GCGAAGGGCG TCAGTAG
|
|---|
| Protein sequence | MANQILFDPL LDWPLLYGLG AALVLIIALS IWRGLSGWPY RLLAGAALLA ALINPSLQTE
DREPLSDIVL LVVDESASQR ISDRPSQTAD ALEALEAEVE ALGMETRVAR VGDADDNSGT
LLMTELQRLM AEEPRARIAG ALIITDGRLH DPELVPDMPA PIHALITGLE TDWDRRLVIE
TAPAFGIIGE ELLLTIRLED QGAVPAGLEG RSQIVIAVDG GPPQTYVVPV GESLELPLTL
EHAGQNVIQF TVPEAEGELT TRNNAAVVQI NGIRDRLRVL LVSGEPHPGQ RTWRNLLKSD
PSVDLVHFTI LRPPDRQDGV PVGELSLIAF PTRELFMEAV DEFDLIIFDR YQRRGILPMV
YIDNIRRYVE DGGALLLAAG PDFAGASSLY RTPLSDILPG RPTARVIEEP YVPLISELGA
RHPVTTGLEG EHTPLPGSDD PWGRWLRQIE LTEQGGQTVM EGAGGAPLLM LDRVGQGRVA
LLASDHAWLW DRGYEGGGPQ LELLRRLAHW MMGEPDLEEE ALVADVDGQT ITITRRTLAD
EVGSVIVTTP DGEQLEVMLE ETAPGAFTAQ IEGLEQGLYR LVESDLERVI ALGPAAPREF
EVTIAGAERI DPLLDAEGGR SVRLEDGLPD LRRVSEGRTA HGRGWLGLTT REAYVTTDVT
VTPFIQAWVF LLLAAGLMLA GWLREGRQ
|
|---|
| |