Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0617 |
Symbol | |
ID | 3933059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 590815 |
End bp | 591831 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637902963 |
Product | DNA-directed RNA polymerase subunit alpha |
Protein accession | YP_508559 |
Protein GI | 89053108 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCATA AAAATTGGCA AGAGCTGATC AAACCCACCC AGCTGGTCGT CCAGCCGGGC ACTGATCCTG CGCGGAAAGC CACCGTCGTG GCTGAACCGC TGGAGCGGGG CTTCGGCCTG ACGCTTGGCA ACGCGCTGCG GCGTGTTCTG ATGTCCTCGC TGCAAGGCGC GGCCATTACG TCGGTGCAGA TTGACGGCGT GTTGCACGAA TTCTCCAGCG TCGCCGGTGT GCGCGAAGAT GTCACCGACA TCGTGCTGAA CCTCAAGGGT GTGGCAATCC GCATGGACGC CGAAGGCCCC AAGCGTGTTT CCATCTCCGC CAAGGGCCCC CGGGTCGTGA CGGCGGGTGA CATCAGCGAG AGCGCAGGTA TCGACGTCCT CAATAAGGAT CACGTGATTT GCCACCTCGA CGACGGTGCT GACCTCTACA TCGAGCTGAC GGTCAACACC GGCAAAGGCT ATGTGGCGGC TGACAAGAAC CGCCCGGAAG ATGCGCCGAT TGGCCTGATG CCGATCGATG CGATCTATTC GCCGGTCAAG AAGGTGTCCT ATGACGTGCA GCCCACCCGT GAGGGGCAGG TGCTGGACTA TGACAAGCTG ACGCTGAAGC TGGAAACCGA CGGCTCGCTG AGCCCTGACG ATGCCGTGGC CTATGCCGCG CGGATCATCC AGGACCAGCT GTCGATCTTC GTGAACTTCG ACGAGCCTGA GTCCGCGACG CGTCAGGACG ACGAAGACGA TCTGGAATTC AACCCGCTTC TCCTGAAGAA GGTTGATGAG CTGGAGCTGT CCGTGCGGTC GGCCAACTGC CTGAAGAACG ACAATATCGT GTATATTGGC GATCTGATCC AGAAGACCGA AGCCGAGATG CTGCGCACGC CGAACTTTGG CCGCAAGTCC TTGAACGAGA TCAAGGAAGT GCTGTCCGGC ATGGGCCTGC ACCTTGGCAT GGATATCGTG GACTGGCCGC CCGACAACAT CGAAGAGTTG GCCAAGAAGT ACGAAGACAA CTTCTAA
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Protein sequence | MIHKNWQELI KPTQLVVQPG TDPARKATVV AEPLERGFGL TLGNALRRVL MSSLQGAAIT SVQIDGVLHE FSSVAGVRED VTDIVLNLKG VAIRMDAEGP KRVSISAKGP RVVTAGDISE SAGIDVLNKD HVICHLDDGA DLYIELTVNT GKGYVAADKN RPEDAPIGLM PIDAIYSPVK KVSYDVQPTR EGQVLDYDKL TLKLETDGSL SPDDAVAYAA RIIQDQLSIF VNFDEPESAT RQDDEDDLEF NPLLLKKVDE LELSVRSANC LKNDNIVYIG DLIQKTEAEM LRTPNFGRKS LNEIKEVLSG MGLHLGMDIV DWPPDNIEEL AKKYEDNF
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