| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0569 |
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| Symbol | |
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| ID | 3933011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 556597 |
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| End bp | 560811 |
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| Gene Length | 4215 bp |
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| Protein Length | 1404 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637902915 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_508511 |
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| Protein GI | 89053060 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.870967 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGG AACTGACAAA CAACCCGTTC AACCCGCTGA CGCCGCCCAA GGCATTTGAC
GAGATCAAGG TCTCGCTCGC TTCGCCCGAG CGGATCCTCA GCTGGTCCTA CGGGGAGATC
AAGAAGCCCG AGACGATCAA CTACCGCACG TTCAAGCCCG AGCGCGACGG CCTGTTCTGT
GCCCGTATCT TCGGGCCGAT CAAGGACTAC GAATGCCTTT GCGGCAAGTA TAAGCGGATG
AAGTATCGCG GCGTTGTCTG CGAGAAATGT GGTGTGGAAG TCACGCTGCA AAAGGTCCGC
CGCGAGCGGA TGGGGCACAT CGAGCTGGCT GCCCCTGTGG CCCACATCTG GTTCCTCAAG
TCGTTGCCGT CGCGCATCGG CCTGATGCTG GACATGACCC TGCGCGATCT TGAGCGGATC
CTGTATTTCG AGAACTATGT GGTGATCGAG CCCGGCCTGA CGGACCTGAC ATATGGTCAG
TTGATGGGCG AAGAGGAGTT TATGGACGCG CAGGACGCCT ACGGCGCCGA TGCGTTCCAG
GCCAACATCG GGGCTGAGGC CATCCGTGAG ATGTTGTCCC AGATTGATCT GGAATCCGAG
GCCAACCAGC TGCGCGAGGA CCTCAAAGAG GCCACCGGAG AGCTGAAGCC GAAGAAGATC
ATCAAGCGTC TCAAGATCGT TGAATCGTTC CTCGAGTCCG GTAACCGGCC CGAGTGGATG
GTGATGACCG TTGTTCCGGT CATCCCGCCA GAACTGCGCC CGCTGGTGCC GCTGGATGGG
GGCCGGTTCG CGACGTCTGA CCTCAACGAT CTGTACCGCC GCGTGATCAA CCGGAACAAC
CGACTGAAGC GCCTGATTGA ACTCCGCGCG CCGGACATCA TCATCCGCAA CGAAAAGCGG
ATGTTGCAGG AATCCGTGGA TGCTCTGTTC GACAATGGCC GTCGGGGCCG CGTGATCACG
GGGGCCAACA AGCGCCCGCT GAAATCGCTG TCGGACATGC TGAAGGGTAA GCAGGGTCGT
TTCCGTCAGA ACCTTCTGGG GAAACGCGTC GACTTCTCGG GCCGGTCCGT GATTGTGACG
GGGCCGGAGC TGAAGCTGCA TCAGTGCGGC TTGCCGAAGA AGATGGCGTT GGAGCTGTTC
AAGCCATTCA TCTATTCGCG ACTTGAGGCC AAAGGTCTGT CGTCCACCGT GAAGCAGGCG
AAGAAGCTGG TCGAAAAGGA ACGTCCCGAA GTGTGGGATA TCCTTGACGA GGTGATCCGG
GAACATCCAG TTCTGCTGAA CCGCGCGCCC ACGCTGCACC GTCTTGGTAT TCAGGCATTC
GAGCCTGTGC TGATCGAAGG CAAGGCGATC CAGCTTCACC CGCTGGTCTG TTCTGCGTTC
AACGCCGATT TCGATGGCGA TCAGATGGCC GTTCACGTGC CGCTGAGCCT TGAGGCACAG
TTGGAAGCCC GCGTCTTGAT GATGTCGACG AACAACGTTC TGTCGCCTGC AAACGGCGCG
CCGATCATCG TTCCGTCGCA GGATATGATC CTGGGTCTCT ACTACGTCAC GCTGGCCCGC
GAGGGCATGA AAGGCGAAGG CATGATCTTT GCCGACGTGG ACGAAGTGCG CCACGCGCTG
GACGCCGGTG AGATCCACCT GCACTCCAAG ATCACGGCGC GCCTGCCGCA GATCGACGAA
GAGGGCAACG AGATCATGGT GCGGTTCGAC ACCACGCCCG GTCGTGTGAT GTTGGGCGCG
CTTCTGCCGC TTAACGCCAA GGCGCCGTTT GATCTGGTGA ACCGTCTGCT GCGCAAGAAA
GAGGTGCAGC AGGTCATCGA CACCGTCTAC CGCTATTGCG GCCAGAAAGA GTCGGTCATC
TTCTGCGACC AGATCATGTC CATGGGCTTC AAGGAGGCGT TCAAAGCGGG CATCTCCTTC
GGCAAGGACG ACATGGTCAT TCCCGATACC AAATGGACGC TGGTGGAAGA TGCCCGCGAT
CAGGTGGAGG AATTTGAGCA GCAGTACATG GACGGCCTGA TCACCCAGGG CGAAAAGTAC
AACAAGGTCA TCGACGCGTG GTCGAAGGTG AACGACAAGG TCACCGACGC CATGATGGGC
ACGATCTCGG CCTCCAAGCG GGACGAGAAC GATGCCGAGA TGGAGCCAAA CTCGGTCTAC
ATGATGGCCC ACTCCGGGGC CCGTGGATCT GTTACGCAGA TGAAGCAGTT GGGCGGCATG
CGCGGCCTGA TGGCCAAGCC GAACGGTGAA ATCATCGAAA CGCCGATCAT CTCGAACTTC
AAGGAGGGTC TGACCGTTCT TGAATACTTC AACTCCACCC ACGGCGCCCG GAAGGGTCTG
TCGGACACGG CGTTGAAGAC GGCGAACTCC GGCTATCTGA CGCGACGTCT GGTGGACGTG
GCCCAGGACT GCATCGTGCG TATGGACGAT TGCGGGACCG AGAACACGAT CAAGGCAGAG
GCGGCCGTGA ACGACGGTGA AGTCGTGGCA TCCCTGGCTG AGCGTATTCT GGGCCGGACG
GCTGGCGAAG ACGTGTTCAT TCCGGGCACC GATGAGATCA TCGTCGCCAA GGGCGAGCTG
ATCGACGAAC GCAAGGCCGA CGCGGTGGAA GCCGCTGGTG TCACGACGAT GCAGATGCGG
TCCCCGCTGA CCTGTGAGGC GGAAGAGGGC GTCTGCGCGA CCTGCTACGG TCGGGATCTG
GCACGCGGCA CGAAGGTGAA CACCGGCGAA GCCGTGGGCA TCATCGCGGC GCAGTCGATT
GGTGAGCCGG GCACACAGCT GACGATGCGG ACGTTCCACA TCGGCGGCGT GGCCCAGGGT
GGTCAGCAGT CCTTTCAGGA GGTCAACGTC GACGGCAAAG TGGAATTCCG CAACGCCAAC
CTGCTGAAGA ACGCCAATGG CGAAAGCGTT GTCATGGGCC GGAACATGGT CCTTGCGATC
ATGGACGATC AGGGCAGCGA ACGCGCGTCG TTCAAGCTGG GTTACGGCAC CAACGTTCTT
GTCGAAGACG GCAAGAAAGT TGTCCGTGGC GACCGTCTGT TCGAATGGGA TCCCTATACC
CTGCCGATCA TCGCGGAAGC GGCGGGAACG GCGAAGTTCG TGGATCTTGT CTCGGGCATT
TCGATCCGCG ATGAAACCGA CGATGCGACG GGCATGACCC AAAAGATCGT CTCGGATTGG
CGCACGGCCC CCAAGGGCAA TGAGCTGAAG CCCGAGATCA TCATCGCGGG CGAAGATGGC
GAGCCGATGC GCAACGATCA GGGCAACCCG GTCACCTACA CGATGTCGGT GGATGCGATC
CTGTCGATCG AAGAAGGCCA AACGGTCAAA GCCGGTGACG TGATTGCGCG TATCCCGCGG
GAAGGTGCGA AGACGAAGGA CATCACCGGT GGTCTGCCGC GTGTGGCCGA ACTGTTTGAA
GCCCGGCGTC CCAAGGACCA CGCGATCATC GCGGAAATCG ATGGCTACGT GAAATTCGGC
CGTGACTTCA AGAACAAGCG CCGGATCGGC ATTGTTCCTG CGGACGAAAG TCTGGAGCCC
GTGGAATACA TGGTGCCCAA GGGCAAGCAC ATCCCCGTGG CCGAAGGCGA TTTCGTTCAG
GTCGGGGATT ACATCATGGA CGGCAACCCC GCGCCGCACG ACATTCTTGC CGTGTTGGGT
GTTGAGGCGC TGGCCGATTA TATGATCGAC GAGGTCCAGG ATGTGTACCG TCTTCAGGGC
GTGAAGATTA ACGATAAGCA CATCGAGGTT ATCGTTCGTC AGATGCTCCA GAAGTGGGAG
ATCCAGGATT CGGGCGAGAC CACGCTGCTC AAGGGTGAGC ATGTGGATAA GGCCGAATTC
GACTCCGCCA ACGCGAAGGC CGTCCGTGAC GGTCGTCGTC CGGCACAGGG GGAGCCGATC
TTGTTGGGCA TCACCAAGGC GTCGCTGCAA ACCCGCAGCT TCATCTCTGC CGCCTCCTTC
CAGGAGACGA CGCGGGTGCT GACGGAAGCC TCTGTTCAGG GCAAGAAAGA CCGTCTGGTC
GGCCTGAAAG AGAACGTCAT CGTGGGCCGT CTGATCCCCG CAGGCACCGG TGGTGCCACG
CAGGATGTGG AGCGGATCGC CAAGGGTCGG GACCAGGTCG TCATCGACGC CGCGCAAGCG
GAAGCCGAAG CCGCCGCAGC CCTGGCCGCA CCGGTCATGG AAGATGCCGC ACCGGATACC
GACGCCGCCG AGTAA
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| Protein sequence | MNQELTNNPF NPLTPPKAFD EIKVSLASPE RILSWSYGEI KKPETINYRT FKPERDGLFC
ARIFGPIKDY ECLCGKYKRM KYRGVVCEKC GVEVTLQKVR RERMGHIELA APVAHIWFLK
SLPSRIGLML DMTLRDLERI LYFENYVVIE PGLTDLTYGQ LMGEEEFMDA QDAYGADAFQ
ANIGAEAIRE MLSQIDLESE ANQLREDLKE ATGELKPKKI IKRLKIVESF LESGNRPEWM
VMTVVPVIPP ELRPLVPLDG GRFATSDLND LYRRVINRNN RLKRLIELRA PDIIIRNEKR
MLQESVDALF DNGRRGRVIT GANKRPLKSL SDMLKGKQGR FRQNLLGKRV DFSGRSVIVT
GPELKLHQCG LPKKMALELF KPFIYSRLEA KGLSSTVKQA KKLVEKERPE VWDILDEVIR
EHPVLLNRAP TLHRLGIQAF EPVLIEGKAI QLHPLVCSAF NADFDGDQMA VHVPLSLEAQ
LEARVLMMST NNVLSPANGA PIIVPSQDMI LGLYYVTLAR EGMKGEGMIF ADVDEVRHAL
DAGEIHLHSK ITARLPQIDE EGNEIMVRFD TTPGRVMLGA LLPLNAKAPF DLVNRLLRKK
EVQQVIDTVY RYCGQKESVI FCDQIMSMGF KEAFKAGISF GKDDMVIPDT KWTLVEDARD
QVEEFEQQYM DGLITQGEKY NKVIDAWSKV NDKVTDAMMG TISASKRDEN DAEMEPNSVY
MMAHSGARGS VTQMKQLGGM RGLMAKPNGE IIETPIISNF KEGLTVLEYF NSTHGARKGL
SDTALKTANS GYLTRRLVDV AQDCIVRMDD CGTENTIKAE AAVNDGEVVA SLAERILGRT
AGEDVFIPGT DEIIVAKGEL IDERKADAVE AAGVTTMQMR SPLTCEAEEG VCATCYGRDL
ARGTKVNTGE AVGIIAAQSI GEPGTQLTMR TFHIGGVAQG GQQSFQEVNV DGKVEFRNAN
LLKNANGESV VMGRNMVLAI MDDQGSERAS FKLGYGTNVL VEDGKKVVRG DRLFEWDPYT
LPIIAEAAGT AKFVDLVSGI SIRDETDDAT GMTQKIVSDW RTAPKGNELK PEIIIAGEDG
EPMRNDQGNP VTYTMSVDAI LSIEEGQTVK AGDVIARIPR EGAKTKDITG GLPRVAELFE
ARRPKDHAII AEIDGYVKFG RDFKNKRRIG IVPADESLEP VEYMVPKGKH IPVAEGDFVQ
VGDYIMDGNP APHDILAVLG VEALADYMID EVQDVYRLQG VKINDKHIEV IVRQMLQKWE
IQDSGETTLL KGEHVDKAEF DSANAKAVRD GRRPAQGEPI LLGITKASLQ TRSFISAASF
QETTRVLTEA SVQGKKDRLV GLKENVIVGR LIPAGTGGAT QDVERIAKGR DQVVIDAAQA
EAEAAAALAA PVMEDAAPDT DAAE
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