| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0568 |
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| Symbol | rpoB |
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| ID | 3933010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 552141 |
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| End bp | 556298 |
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| Gene Length | 4158 bp |
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| Protein Length | 1385 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637902914 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_508510 |
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| Protein GI | 161898397 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.941099 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAA CTTACGCAGG CCAGAAACGT ATCCGCAAAT TCTATGGCAA AATCCGCGAA
GTGCTGGAGA TGCCGAACCT GATCGAGGTG CAGAAGTCGT CCTACGACCT GTTCCTGAAG
TCGGGCGATC AGTTGGAGCC GATGGACGGC GAAGGCATCA AGGGTGTCTT CCAGTCGGTG
TTCCCGATCA AGGATTTCAA TGAAACCGCG ATTCTTGAGT TCGTGAAGTA CGAGCTGGAG
ACCCCGAAGT TCGACGTCGA GGAGTGCCAG CAGCGCGACC TCACCTATGC CGCGCCCCTC
AAGGTGACGC TGCGGCTGAT CGTGTTCGAT ATCGACGAGG ATACCGGCGC GAAATCCGTC
AAGGACATCA AGGAACAGGA CGTTTTCATG GGCGACATGC CCCTGATGAC GCCCAACGGG
ACGTTCGTTG TGAACGGCAC CGAGCGTGTG ATCGTATCCC AGATGCACCG CTCGCCCGGC
GTGTTCTTTG ATCACGACAA GGGCAAGACC CACTCCTCGG GCAAGCTGCT GTTCGCCTGC
CGCATCATTC CCTATCGCGG CTCCTGGCTG GACTTCGAGT TTGACGCCAA GGACATCGTG
TTCTCGCGCA TCGACCGTCG TCGTAAACTG CCCGTGACCA CGCTGCTTTA TGCGCTGGGT
CTGGACCAGG AAGGCATCAT GGATGCCTAT TACGACACCG TCACCTTCAA GATGGTGAAG
AACAAGGGCT GGTCCACGAA GTTCTTCCCC GAGCGTGTGC GCGGCACCCG TCCGACCACC
GATCTGGTCG ACGCCAAGAC CGGTGAAGTG ATCGCCGAGG CGGGCAAGAA GGTCACGCCC
CGCGCGGTGA AAAAGTGGAT CGACGAAGGC TCCATCGAGA ACCTGCTGGT GCCGTTTGAC
GGCATTGTCG GGCGATTTGC CGCCAAGGAC ATCATCAATG AAGAAACCGG CGCGATTTAT
GTCGAAGCCG GCGATGAGTT GACCTGGGAG CTGGACAAAG CCGGCGAGGT CAGCGGCGGG
ACGCTGAAAG AGCTGATCGA CGCGGGCATC ACCGAGATCC CCGTGTTGGA CATCGATAAC
GTCAATGTCG GCCCCTACAT GCGCAACACG CTGGCCGTGG ACAAGAACCT CAACCGCGAG
AGCGCGTTGA TGGATATCTA CCGCGTCATG CGTCCGGGCG AGCCCCCCAC CGTTGAAGCC
GCGTCGAACC TGTTCGACCA GCTGTTCTTC GACAGCGAGC GTTATGACCT CAGCGCCGTT
GGCCGGGTGA AGATGAACAT GCGTCTCGAT CTGGACGCGG AAGACACCAT GCGGACGCTG
CGCAAGGAAG ACATCATCTC CTGCATCAAG GCGCTGGTGG AACTGCGCGA CGGGCGCGGC
GATATCGACG ACATCGACCA CCTCGGCAAC CGTCGTGTGC GGTCCGTCGG TGAGTTGATG
GAGAACCAGT ACCGTGTGGG CCTGTTGCGC ATGGAGCGCG CGATCAAGGA GCGTATGTCC
TCGGTCGAGA TCGACACGGT CATGCCGCAG GACCTGATCA ACGCCAAGCC AGCGGCGGCT
GCCGTTCGTG AATTCTTCGG CTCCTCGCAG CTGTCGCAGT TCATGGACCA GACCAACCCG
CTGTCTGAGG TGACGCACAA ACGCCGCCTG TCGGCGCTTG GGCCGGGTGG TCTGACACGC
GAGCGTGCGG GCTTTGAGGT GCGCGACGTG CATCCCACGC ACTACGGTCG CATGTGCCCG
ATTGAAACGC CGGAAGGGCC GAACATCGGC CTGATCAACT CGCTGGCCAC CTATGCCCGC
GTGAACAAAT ACGGCTTCAT CGAAACGCCC TATCGCCGTG TGAACGACGC TGTGGTCTCC
GACGACGTGG TCTACATGTC CGCAACGGAA GAGATGCGTC ACACCGTGGC GCAGGCCAAC
GCGAACCTTG ATGACGATGG CAAGTTCGTC AACGACATGG TCAACACGCG GATGTCCGGC
GAATACACGC TGAACCCCCG TGAAGCGATT GACCTGATCG ACGTGTCGCC GAAGCAGTTG
GTCTCCGTCG CGGCCTCGCT GATCCCGTTC CTGGAGAACG ACGACGCGAA CCGCGCGTTG
ATGGGATCGA ACATGCAACG CCAAGCCGTG CCGCTTCTGC AGGCCGATGC TCCGTTCGTG
GGTACCGGGA TTGAGAGCGT TGTGGCGAAG GATTCCGGCG CGGCCATCAT GGCCAAGCGC
GGCGGTGTCA TCGACCAGGT CGATGCGCAG CGGATCGTGA TCCGGGCCAC CGAAGATCTG
GAATTGGGCG ACGCGGGCGT GGACATCTAC CGTCTGCGCA AGTTCCAGCG CTCCAACCAG
AACACCTGCA TCAACCAGCG TCCGTTGGTG AAGGTGGGTG ACAAGATCGG TAAGGGCGAA
GTGATCGCCG ATGGACCAAG CACAGATATC GGTGAGTTGG CCCTTGGTAA GAACGTGATC
GTCGCGTTCA TGCCGTGGAA CGGCTACAAC TATGAGGACT CAATCCTGAT TTCCGAGCGG
ATTTCGCGTG ACGACGTCTT CACCTCGATC CATATCGAGG AGTTTGAAGT CGCCGCCCGT
GACACGAAGC TTGGGCCGGA AGAGATCACC CGTGACATCC CCAACGTCGG CGAGGAAGCC
CTGCGCAACC TCGACGAGGC GGGCATCGTC TACATCGGTG CCGAAGTGGA ACCGGGCGAT
ATCCTTGTCG GTAAGATCAC GCCAAAGGGT GAAAGCCCGA TGACGCCGGA AGAAAAGCTT
CTGCGCGCCA TCTTTGGTGA GAAAGCCTCG GACGTTCGTG ACACATCGCT GCGCGTGAAG
CCCGGCGACT ACGGCACGAT CGTGGAAGTG CGCGTCTTCA ACCGCCACGG TGTGGAGAAG
GACGAACGTG CCCTCCAGAT CGAGCGGGAA GAGGTCGAGC GTCTGGCCCG TGACCGTGAC
GACGAGTTGG TGATCCTTGA GCGGAACATC TACGCCCGTC TGCGCGGTAT GATCATGGGT
AAAACCGCCG TCAAAGGCCC CAAGGGCGTG AAGCCCAACA CGGTCATCGA CGAGGATCTG
CTGGATGGTC AACTCAGCCG CGGTCAGTGG TGGCAGTTGG CGCTGGAAGA CGAGAAGGAC
GCGGCGCATA TCGAGGCCCT GAACCAACAA TTCGACACGC AGAAGCGCGC GTTGGATCAC
CGGTTCGAGG ACAAGGTCGA GAAGGTCCGT CGCGGCGACG ATCTGCCCCC GGGCGTGATG
AAGATGGTCA AGGTTTTCAT CGCCGTGAAG CGCAAGTTGC AGCCCGGCGA TAAGATGGCC
GGTCGTCACG GCAACAAGGG TGTGATCTCG AAGGTGGTCC CGATGGAGGA CATGCCGTTC
CTGGCAGACG GTACGCCGGT TGATTTCGTG CTGAACCCGC TGGGTGTGCC CTCGCGCATG
AACGTGGGTC AGATCCTGGA AACCCACATG GGTTGGGCCG CACGCGGCAT GGGTCTGCAG
ATCGACGAAG CACTGGACGA ATATCGCCGC TCTGGCGACA TGACCCCGGT GCGCGATGCC
CTGAAGATCG CCTATGGCGA CGACGTCTAC GACGACGCGT TTGCCGACCG CGACGAGGAG
TCTCTGCTGG AGGCCGCAGG CAACGTGACC AAAGGTGTTC CGATTGCAAC GCCCGTCTTT
GACGGCGCGA AGGAAGCGGA TGTGAACGAT GCGCTGATCC GCGCGGGCTT CTCCACCTCC
GGTCAGTCGA AACTGTTCGA CGGTCGCACC GGTGAGCAAT TCGCCCGCGA AGTGACGGTG
GGTGTCAAAT ACCTGCTGAA GCTGCACCAC CTGGTCGACG ACAAGATCCA CGCCCGCTCA
ACCGGGCCGT ACTCCCTCGT CACGCAGCAG CCGCTGGGTG GCAAAGCGCA GTTCGGTGGT
CAGCGCTTCG GTGAGATGGA GGTCTGGGCG CTGGAAGCCT ACGGCGCCGC CTACACCTTG
CAGGAAATGC TGACGGTCAA GTCGGATGAC GTTGCGGGCC GAACCAAGGT ATACGAGAGC
ATCGTGAAGG GTGAGGACAA CTTCGAGGCC GGCGTGCCGG AATCGTTCAA CGTTCTCGTC
AAGGAGGTCC GCGGATTGGG CCTCAACATG GAACTCCTCG ACGCTGAGGA TGATGAAGGG
GGCATCGCAG CGGAATGA
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| Protein sequence | MPQTYAGQKR IRKFYGKIRE VLEMPNLIEV QKSSYDLFLK SGDQLEPMDG EGIKGVFQSV
FPIKDFNETA ILEFVKYELE TPKFDVEECQ QRDLTYAAPL KVTLRLIVFD IDEDTGAKSV
KDIKEQDVFM GDMPLMTPNG TFVVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAC
RIIPYRGSWL DFEFDAKDIV FSRIDRRRKL PVTTLLYALG LDQEGIMDAY YDTVTFKMVK
NKGWSTKFFP ERVRGTRPTT DLVDAKTGEV IAEAGKKVTP RAVKKWIDEG SIENLLVPFD
GIVGRFAAKD IINEETGAIY VEAGDELTWE LDKAGEVSGG TLKELIDAGI TEIPVLDIDN
VNVGPYMRNT LAVDKNLNRE SALMDIYRVM RPGEPPTVEA ASNLFDQLFF DSERYDLSAV
GRVKMNMRLD LDAEDTMRTL RKEDIISCIK ALVELRDGRG DIDDIDHLGN RRVRSVGELM
ENQYRVGLLR MERAIKERMS SVEIDTVMPQ DLINAKPAAA AVREFFGSSQ LSQFMDQTNP
LSEVTHKRRL SALGPGGLTR ERAGFEVRDV HPTHYGRMCP IETPEGPNIG LINSLATYAR
VNKYGFIETP YRRVNDAVVS DDVVYMSATE EMRHTVAQAN ANLDDDGKFV NDMVNTRMSG
EYTLNPREAI DLIDVSPKQL VSVAASLIPF LENDDANRAL MGSNMQRQAV PLLQADAPFV
GTGIESVVAK DSGAAIMAKR GGVIDQVDAQ RIVIRATEDL ELGDAGVDIY RLRKFQRSNQ
NTCINQRPLV KVGDKIGKGE VIADGPSTDI GELALGKNVI VAFMPWNGYN YEDSILISER
ISRDDVFTSI HIEEFEVAAR DTKLGPEEIT RDIPNVGEEA LRNLDEAGIV YIGAEVEPGD
ILVGKITPKG ESPMTPEEKL LRAIFGEKAS DVRDTSLRVK PGDYGTIVEV RVFNRHGVEK
DERALQIERE EVERLARDRD DELVILERNI YARLRGMIMG KTAVKGPKGV KPNTVIDEDL
LDGQLSRGQW WQLALEDEKD AAHIEALNQQ FDTQKRALDH RFEDKVEKVR RGDDLPPGVM
KMVKVFIAVK RKLQPGDKMA GRHGNKGVIS KVVPMEDMPF LADGTPVDFV LNPLGVPSRM
NVGQILETHM GWAARGMGLQ IDEALDEYRR SGDMTPVRDA LKIAYGDDVY DDAFADRDEE
SLLEAAGNVT KGVPIATPVF DGAKEADVND ALIRAGFSTS GQSKLFDGRT GEQFAREVTV
GVKYLLKLHH LVDDKIHARS TGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL
QEMLTVKSDD VAGRTKVYES IVKGEDNFEA GVPESFNVLV KEVRGLGLNM ELLDAEDDEG
GIAAE
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