| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0547 |
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| Symbol | |
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| ID | 3932988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 536100 |
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| End bp | 536759 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637902892 |
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| Product | Hly-III related proteins |
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| Protein accession | YP_508489 |
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| Protein GI | 89053038 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACATC TTCGATCCAA TCGAGCGTAC AGTCGGGCCG AGTATCTCTC GGACGCGGTC
GTGCACGGGC TTGGCATCGG GGGTGCGTTG ATCGCCGGGC CCGTTTTGAT CACCCTCGCA
GCCGTCTGGG TCGGCGACCC GACCCTCATC GGCGCGCTGG CGATCTACAC GATCACGCTG
CTGGCGATGT GGGTGTGTTC CGCCCTCTAC AACCTTGTCC AAAGCGAGGA TCTCACCCCT
CGCTTCCGGC GCTTTGACCA ATCGGCGATC TATTTCAAGA TAGCCGGCAC CTACACGCCC
TTTATCGCGC TGGCCTCGGG ATCAATGGGG TTTTTCGCAG GCATCTGGAC CGTTGCGCTG
GCGGGGGCAT CGGTCATCCT GTTTTCCAAA CGCTCCTACA TCTGGCTGGC GATTGCCCTC
TATCTTGGCC TTGGATGGGC AGGCACGGTC GCTGGTGGGC CACTTTTGTC AGGTATCACG
CCGCTGGCCA TGTCCCTTTT GATCGTAGGG GGGCTGACCT ACTCGTTTGG GATCATTTTC
CTGATGTGGA GCAAGCTGCC CTTCCACAAC ACGATCTGGC ATATCTGCGT ACTGGCCGGG
ACATCCGTGT GCTACGCCGC AATCATTGCA GAATTGCTGC ACAACGCCCC CCACGTGTAA
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| Protein sequence | MAHLRSNRAY SRAEYLSDAV VHGLGIGGAL IAGPVLITLA AVWVGDPTLI GALAIYTITL
LAMWVCSALY NLVQSEDLTP RFRRFDQSAI YFKIAGTYTP FIALASGSMG FFAGIWTVAL
AGASVILFSK RSYIWLAIAL YLGLGWAGTV AGGPLLSGIT PLAMSLLIVG GLTYSFGIIF
LMWSKLPFHN TIWHICVLAG TSVCYAAIIA ELLHNAPHV
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