| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0443 |
|---|
| Symbol | |
|---|
| ID | 3932884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 446342 |
|---|
| End bp | 448399 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637902788 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_508385 |
|---|
| Protein GI | 89052934 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGTCG AACACCCCGA CACATCTGCG ATTTTGAAAT CCACCTTCGG ATTTGACGCC
TTCCGCCCCG GTCAGGCGGA AATTGTGGAG GCTGTGGCGT CCGGCAAAGA CGTCTTGGCC
ATTATGCCAA CCGGCGGCGG CAAAAGCCTT TGTTTCCAGC TGCCCGCACT GGTTCGCGAC
GGAGTTACGG TTGTGATTTC TCCGCTGATT GCGCTGATGC GCGATCAGGT GCGCGGTCTG
CGGGAAGCGG GGGTGGAGGC GGGCGCTTTG ACCTCTGGCA ATACGCCCGA GGAAACGGAC
GCGGTGTGGG AGGGACTGGA GCGCGGGACG CTGAAGTTGC TCTACCTCGC GCCGGAACGG
CTTGCCTCAA CGGGGACGGA ACGGATGTTG GCACGCGCGG GCGTATCGAT GATCGCCGTG
GATGAAGCCC ATTGTGTCAG CCAGTGGGGC CACGATTTCC GTCCCGATTA TCTGCGCCTT
GGCGCGTTGC GTCGTGCGCT GAACGTCCCG CTGGCCGCTT TCACCGCCAC GGCGGACGCA
GAAACGCGGG CCGAGATTTG CGAACGCCTG TTCGAGGACC CGCCAGAGGT GTTCCTGCAT
GGCTTCGACC GCCCAAACCT GACCCTCGCG TTTGAGGTCA AGAACCAGCC GCGCCAGCAG
ATCCTGTCGT TTGCCGCCGC GCGCAAAGGC CAGTCCGGCA TCGTCTATTG CGGCACACGG
GCGAAGACGG AAACGCTTGC CAAGGCTTTG CGGGACGAGG GCCACAGCGC CTGCCATTAC
CATGGTGGGA TGGAGGCGGA TGACCGACGG ATTGTGGAGA CCCGCTTTAA CCGCGAAGAC
GGCTTGATCG TCTGCGCTAC GGTGGCTTTT GGGATGGGGG TCGACAAGCC CGATATCCGT
TGGGTCGCCC ATGCCGATCT GCCCAAGTCG ATCGAGGGGT ATTATCAGGA AATCGGTCGT
GCCGGTCGCG ACGGCGCGCC TGCCGATACG CTGACGCTCT ACGGTCCCGA TGATATCCGC
TTCCGGCGCC AGCAGGTGGA CGAGGGCCTC GCCCCGCCAG AACGCAAAAC AGCAGACCAC
GCCCGCCTGA ACGCGCTTCT GGGTCTGGCG GAAGCGCAGG GATGTCGCCG TAAAGTGCTG
CTGTCCTACT TCGGGGATGA GGCTGAGGAT TGTGGCAATT GTGATCTCTG CGCCAGGCCG
CCGGAATTAT TTGACGCCTC CGTTGCCGTG CAAAAGGCGC TGTCCGTGAT GCTGCGCACA
GGTGAATATT TCGGCGCGGG TCATTTGATA GATGTCCTCC TTGGCGCGCA GAATGAGAAG
ATCAGGCAGC GGGGTCATGA TCGTCTGTCG ACCTACGGCA TCGGGACGGA GTTCGACAAA
CGCGGCTGGC AGGCCGTGTT CCGGCAGATG ATGGGACGCG ACCTTGTCCG CCCCGATCCG
GAGCGTCACG GCGCGTTTCG CATGACCGAC GCTGCGCGCC CTATTTTGCG CGGGGAAGAA
GGCATCACGC TGCGCAAAGA TACGATCTCA AAAGCGCCCC GCCGTCCCGC CGTGAAGATG
CTGGTGAGCG AGGAGGACGC GCCGCTGATG TCCGCACTGA AAGCCAAGCG CCGCGCCTTG
GCCGAGGATG CGCGCGTGCC CGCTTACGTG ATTTTCACCG ACAAGACGTT GATCGAAATG
GCCGAGAAAC GACCGGACAC CCTGGACGAC ATGGCCCGCA TTTCCGGTGT TGGGGCCACC
AAGCTGGAAC GGTATGGCAC GGCATTCCTG CAAGTCATAA CGGGTGACAC GCCTGAGGCC
GTTCACCCCG CCCGCCGTGC ACTGGCCGGG CGCGATGCAG GCGATGTCTT CGACAGGCTG
ATGGAGGTCC AGCAGGACCT GATGCGCGGG GACGACGGCA CGGGCAAGTA TCTCTCGGTC
AATCACTCGA CGCTTCGCAG GATCGCCGAG CGCAGGCCCG CCTCGCTGCA CGATATGGCG
CGGATCGCGG GTATGGGCGA CAAGCAGGTG GACCGCTTTG CGGAAGCGTT TCTGGAGGTT
CTGCGCGAGG CTGGATAA
|
|---|
| Protein sequence | MLVEHPDTSA ILKSTFGFDA FRPGQAEIVE AVASGKDVLA IMPTGGGKSL CFQLPALVRD
GVTVVISPLI ALMRDQVRGL REAGVEAGAL TSGNTPEETD AVWEGLERGT LKLLYLAPER
LASTGTERML ARAGVSMIAV DEAHCVSQWG HDFRPDYLRL GALRRALNVP LAAFTATADA
ETRAEICERL FEDPPEVFLH GFDRPNLTLA FEVKNQPRQQ ILSFAAARKG QSGIVYCGTR
AKTETLAKAL RDEGHSACHY HGGMEADDRR IVETRFNRED GLIVCATVAF GMGVDKPDIR
WVAHADLPKS IEGYYQEIGR AGRDGAPADT LTLYGPDDIR FRRQQVDEGL APPERKTADH
ARLNALLGLA EAQGCRRKVL LSYFGDEAED CGNCDLCARP PELFDASVAV QKALSVMLRT
GEYFGAGHLI DVLLGAQNEK IRQRGHDRLS TYGIGTEFDK RGWQAVFRQM MGRDLVRPDP
ERHGAFRMTD AARPILRGEE GITLRKDTIS KAPRRPAVKM LVSEEDAPLM SALKAKRRAL
AEDARVPAYV IFTDKTLIEM AEKRPDTLDD MARISGVGAT KLERYGTAFL QVITGDTPEA
VHPARRALAG RDAGDVFDRL MEVQQDLMRG DDGTGKYLSV NHSTLRRIAE RRPASLHDMA
RIAGMGDKQV DRFAEAFLEV LREAG
|
|---|
| |