| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0356 |
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| Symbol | |
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| ID | 3932797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 359493 |
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| End bp | 361829 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637902701 |
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| Product | ribonuclease R |
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| Protein accession | YP_508298 |
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| Protein GI | 89052847 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCCC CGCACCTGCG TGCTACCTCA CCCCCCATGA GCAACATCCC TTCCAAAGAG
CAGATCCTGC AATGGATCAC CGACAACCCC GGCAAACGGT CCAAGCGCGA TATCGCCAAG
GCGTTTGGCA TCAAGGGGGC GGCGCGGATT GATCTGAAGC GGATCCTCAG GGAGTTGCAG
GAGGAGGGGC ATCTGGAAAA GGTCGGGCGG ACCTATCGCG ACCCGGACAA ACTGCCGCCG
GTGACGATCC TGTCCGTGCA GGCGCCCGAC GACAACGGCG ATCTGTTTGC GCGGCCTCTG
GAATGGCACG GCGAGGGGGT GGAGCCGCGC GTGCTGTACA CGCCTCGGAC GGCGGACCCG
GCGGTGGGAC AGGGCGACCG CATTCTGGCG AAGCTCTTTG CGGTGGAGGG CTCCGACGCA
GAAGACCACC AATATACCGC CAAGCTGATC CGTAAGATCG GGACCAACCC GCGCAAGATC
CTGGGGATTT TCCGCAAGGG GGCGGAGGGG GGCGTGATCA CGCCGATCTC CAAAGGGTCC
GACAAGGAAT GGCAGGTGCG GGCCGGTGAT ACGCACGGGG CCAAGGATGG CGAATTGGTG
GAGGGGGAGC TGGCCGGGCC CAAGGCGCGG ATGGGGGCGC CGCGGGCCCG GATCACGACG
CGCGTGGGCG ATCCCGGGGC CGCGCGGGCC GTGTCGCTGA TCGCGATCCA TGAACATGGC
ATCCCCGACA GCTTCCCCAA CAAGGTCGTG GCCGAGGCTG ATGCGGCCAA ACCCGCCGGC
CTGACGGGGC GGGAGGATCT GCGCGATCTG CCCCTGATCA CCATCGACCC GGCGGATGCG
CGCGACCATG ATGATGCCTG CTATGCCCAT GCCGATGAGG ACCCGGGCAA CAAGGGCGGC
CATGTCATCT GGGTCGCGAT TGCGGATGTG GCCCATTACG TCACGCCCGA CAGCGCGCTG
GATCGCGAAG CGCGCAAGCG TGGCAACTCC ACCTATTTCC CGGACCGTGT GGTGCCGATG
CTGCCGGATC GGTTGTCGGG CGATCTTTGC TCGTTGCACG AGGGGGTGCC GAGGGCGGTG
ATCGCGGTGC GGATGGTGAT TGACGCCAGG GGCGAGAAAA TCGGCCACAC GTTCCATCGC
GGGCTGATGA CATCTGTCGC TTCGCTGAGT TACGAGGAGG CGCAGGCGGC GCAGGAGGGC
ACGCTCTCCG AGCGCACCGC GCCCCTCATC GAGGGCTCAA TTCGCCCTCT CTTCGCAGCT
TATGACGCGT TGAAGATCGC ACGGGCCAAG CGGCAACCGC TGGAGCTGGA CCTGCCGGAG
CGGCGGATTG AACTGGATGA CGCGGGCAAT GTCACCTCGG TGGCGTTCAA GGATCGCCTG
GACGCGCACC GCCTGATTGA GGAATTCATG GTGCTGGCCA ACGTTGCGGC GGCGGAGACG
CTGATCGCCA AGCGAACCCC GCTGCTGTTC CGCGTCCATG AGGAGCCGTC GCCCGAGAAG
CTGGAAGCCC TGCGGGAGGT GGCCGCCAGT GCGGGTCTGA CGCTCGCCAA GGGGCAGGTG
TTGCAGACCC GGCACCTGAA TGCGCTGCTG AAGGCGGCGG GGGAGGATAC GTCCGAGTTG
ATCTCCATCT CCACCCTGCG GTCGATGCAG CAGGCCTATT ACAACCCCGA GAATTTCGGC
CACTTTGGGC TTGCTTTGAA AAGCTATGCC CACTTCACGT CGCCGATCCG GCGCTACGCG
GATCTGATCG TGCACCGGGC GCTGATTGCT GCCCATGGGT GGGGGCCCGA CGCGAAAATA
GACGGCCTGT CGCCCGATGA AATTGAACGG CTGGAAGATA CGGCCAAGCT GATTTCGGGC
ACCGAACGGC GGTCCATGGT GGCGGAGCGG GACACGTCCG ACCGCTATCT GGCCGCGTAT
CTCTCGGACC GGGTGGGGGC GGAATTTGGC GGGCGCATCT CGGGCATTGC GCGGTTCGGC
GTGTTCGTGA AGCTGGATGA GACGGGGGCC GATGGCCTTT TGCCGATGCG CGCTTTGGGG
CAGGAATATT TCCATTTCGA TGCCGAGGCG CAGACGCTGA TGGGCGCGGA TACCGGCACG
ATGATCAGCA TCGGCGACCG GGTGCTGGTG AAGCTGGCCG AGGCCGTGCC CGTGACCGGT
GGCCTGATCC TGGAGCTTCT GGAGCATGAT GGCAAAGCGC CGTCCCGTGG CTCCGGGCGC
GGTGCGCGGA AGGGTGGGGG TCGTGGGCGC GGCAAGCCGC CTGCGCGGCG CAAGGTCAGC
GCCTCCAAGG CACGCAAGAC GAAGCTGCGC AAAAAGCAGG ACCGCAGCAG ACCCTAG
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| Protein sequence | MTPPHLRATS PPMSNIPSKE QILQWITDNP GKRSKRDIAK AFGIKGAARI DLKRILRELQ
EEGHLEKVGR TYRDPDKLPP VTILSVQAPD DNGDLFARPL EWHGEGVEPR VLYTPRTADP
AVGQGDRILA KLFAVEGSDA EDHQYTAKLI RKIGTNPRKI LGIFRKGAEG GVITPISKGS
DKEWQVRAGD THGAKDGELV EGELAGPKAR MGAPRARITT RVGDPGAARA VSLIAIHEHG
IPDSFPNKVV AEADAAKPAG LTGREDLRDL PLITIDPADA RDHDDACYAH ADEDPGNKGG
HVIWVAIADV AHYVTPDSAL DREARKRGNS TYFPDRVVPM LPDRLSGDLC SLHEGVPRAV
IAVRMVIDAR GEKIGHTFHR GLMTSVASLS YEEAQAAQEG TLSERTAPLI EGSIRPLFAA
YDALKIARAK RQPLELDLPE RRIELDDAGN VTSVAFKDRL DAHRLIEEFM VLANVAAAET
LIAKRTPLLF RVHEEPSPEK LEALREVAAS AGLTLAKGQV LQTRHLNALL KAAGEDTSEL
ISISTLRSMQ QAYYNPENFG HFGLALKSYA HFTSPIRRYA DLIVHRALIA AHGWGPDAKI
DGLSPDEIER LEDTAKLISG TERRSMVAER DTSDRYLAAY LSDRVGAEFG GRISGIARFG
VFVKLDETGA DGLLPMRALG QEYFHFDAEA QTLMGADTGT MISIGDRVLV KLAEAVPVTG
GLILELLEHD GKAPSRGSGR GARKGGGRGR GKPPARRKVS ASKARKTKLR KKQDRSRP
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