| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0248 |
|---|
| Symbol | |
|---|
| ID | 3932686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 244681 |
|---|
| End bp | 246117 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637902591 |
|---|
| Product | putative oxidoreductase |
|---|
| Protein accession | YP_508190 |
|---|
| Protein GI | 89052739 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit
[TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAGC AACCCATGTT GAAGTTTGTA ACCGTTGGCA AGGAAATGCC TCAAAAGCGG
GAAGCGGACC AGCGGAAAGA GGATTTCGCC GAGATCTACG GCGAGTATGT GACCGCCAAG
GCAGAGGAGC AGGCCGGGCG TTGCAGCCAG TGTGGAGTGC CCTATTGTCA ATCTCACTGC
CCGCTGCATA ACAATATACC CGATTGGTTA AAATTAACTG CAGAAGGGCG GCTGCGCGAG
GCCTATGACC TCAGCCAAGC CACCAACACC TTCCCTGAGA TCTGTGGCCG CATCTGCCCG
CAGGACCGTT TGTGCGAGGG AAATTGCGTG ATCGAGCAGT CGGGCCATGG CACTGTTACC
ATCGGCTCGG TCGAGAAATA TATCACCGAT ACCGCCTGGG ATAACGGGTG GGTCATGCCC
ATTGCGCCGC ATACAGAACG CCCTGAATCC GTTGGGATAA TCGGTGCCGG CCCCGGTGGC
TTGGCCGCCG CAGATATGCT GCGGCGCGCG GGTCTCCAGG TCACTGTTTA CGATCGCTAT
GATCGCGCGG GTGGGCTGAT GGTCTATGGC ATTCCTGGCT TCAAGCTGGA GAAAGACGTT
GTGATGCGGC GCAACAAACA GCTGGAAGAT GGTGGCGTGG AGTTCGTGTT GAACTGCAAT
GTCGGCGAGG ACATTTCGTT AACCGACATC CGCGAAAAGC ACGATTTCGT CGTGATTGCC
ACGGGTGTCT ACAAGTCGCG TGAGCTGGAC GGCCCCGGAT CGGGCAGCGA CGGGATTATC
CGCGCGATTG ATTATCTAAC CGCCTCTAAT CGCAAGTCTT TTGGCGATGA CGTGCCGGAA
TTTGACAGCG GCGAGTTGGA CGCCAAGGGA AAGCGGATTG TGGTTATTGG TGGCGGCGAC
ACGGCGATGG ACTGTGTCCG CACGGCGACG CGGCAGGGGG CGACCTCGGT CAAATGCCTC
TACCGTCGCG ACGAGGTCAA TATGCCCGGC TCCATGCGTG AAGTGCAGAA CGCCAAGGAA
GAAGGTGTTG AATTCGTTTG GCTTTCCGCA CCCAAGGGGT TCAGCGACGC CAAGGGTGCC
GTTGATGGTG TCATGGTCCA GAAAATGCGC CTCGGCGCGC CCGACGCAAC GGGGCGTCAA
AGCCCGGAAG TCATTGAAAA CGCAGATTAT GTTGAGGGCG CGGACATGGT GATCAAGGCG
CTGGGCTTCT CCCCCGAGGA TTTGCCGATG CTGTGGGACA CGCCCGAGTT GGAGATCACG
CGCTGGGGCA CTGTGAAGGC CAACCGCACC CATGAAACCG CCCTGCCCAA TGTTTTCGCG
GTGGGTGATA TCGTGCGGGG TGCCAGCCTG GTCGTCTGGG CGATCCGTGA TGGCCGTGAG
GCAGCCGAGG CGATCCTTGA GCGGGTTTAC GCAACCGGTA CGGTGGCCGC GGAGTGA
|
|---|
| Protein sequence | MAKQPMLKFV TVGKEMPQKR EADQRKEDFA EIYGEYVTAK AEEQAGRCSQ CGVPYCQSHC
PLHNNIPDWL KLTAEGRLRE AYDLSQATNT FPEICGRICP QDRLCEGNCV IEQSGHGTVT
IGSVEKYITD TAWDNGWVMP IAPHTERPES VGIIGAGPGG LAAADMLRRA GLQVTVYDRY
DRAGGLMVYG IPGFKLEKDV VMRRNKQLED GGVEFVLNCN VGEDISLTDI REKHDFVVIA
TGVYKSRELD GPGSGSDGII RAIDYLTASN RKSFGDDVPE FDSGELDAKG KRIVVIGGGD
TAMDCVRTAT RQGATSVKCL YRRDEVNMPG SMREVQNAKE EGVEFVWLSA PKGFSDAKGA
VDGVMVQKMR LGAPDATGRQ SPEVIENADY VEGADMVIKA LGFSPEDLPM LWDTPELEIT
RWGTVKANRT HETALPNVFA VGDIVRGASL VVWAIRDGRE AAEAILERVY ATGTVAAE
|
|---|
| |