Gene Jann_0164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_0164 
Symbol 
ID3932601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp156490 
End bp157938 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content60% 
IMG OID637902506 
Productputative PAS/PAC sensor protein 
Protein accessionYP_508106 
Protein GI89052655 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR02040] transcriptional regulator PpsR 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACGC GCGGAACAGA TTTTTGGGAT AAACCCTCGT CGCCTCCGAT TGGGCCCGAG 
CAGTTTAGCG AGATTGTGAC CACGGCAGCG GATCTGGCCA TTGTGCTGGA TACGGGCGGC
AAGGTTCATT CTGTCGTCAC CAACCCGCTG AACCCCACCC TTGGACAGCT TGATCATTGG
AAGGATCGCG ATATCCGCGA GTTCCTGACG ATTGAAAGCC TGCCCAAGAT CGACGCACAG
CTCAGCGCCT ATCGGGACGG TGTGCCCGCC AAGGTTGATG CGATTGAGGT GAACCATTCC
GACAATGCGG ATTGGGAATT TCCGATCCGA TACACGCTGC ACAAGACAAG CCGCGATGAC
ATCATCCTTA TGCTTGGCCG CGATCTGCGC CCGATTGCGG AATTGCAGCA CCGGCTGGTG
AAGGCGCAGC TGGCGCTGGA AAAAGACTAC GAGTCGCACC GGGATTATGA AACGCGCTAC
CGTGTGATCA TGGAAGCGGC GCGCGATGCG ATGGCGCTGG TCGATGTCGC GTCTGGCCGG
ATCGTCGATG TGAACGGGCT TGGCGCGCAA ATTCTGGGCA CGGACGCGGA GGCCCTGACC
GGTGCCGCCT TTACCCAGGA ATTTGAAGGG CGTCGCCGGG GCGAGTTTAT CGAAGGCCTG
GTGAATGCGG CCAGTGATGA GGCGTCTCAG GTCGTGACCG TGAAGACGCG CCGAACGCAG
GCCGATGTCG TACTTCATCC GCTGGTCTTC CGCGCCGCTG GCGACCGGAC GCTTTTGTGC
CGGATTGAAA CGGCAGGCAC GGCCGAGACG GTTGCGGCCG AACTGGCGCA GGTCTTGTCC
GCCCTCTACC GCGATGGGGC CGATGCGATT GTGTTCACCG ACGCCGTTGG CATCATCCGG
TCGGCCAATG ATGCCTTCCT CAGCCTGTGC GACGCCGGGC AGATTGGCGA TGTGCGGGGC
AAGTCCATTG CCGAATTTCT GTCGCGCGGC TCTGTCGACC TGAAAGTTCT GATCGACAAC
GCCACACGCA ACAAGAAGAT GCGGCTTTAT TCCACGCGTC TGGACGGGGC CTTTGGGTCG
CAATTGTCGG TGGAGATGTC TGCGACCTTG CTGAACAGCG GCGGCACCAC GGGCTTTGCC
TTCGTCGTGC GCGACATAAG CCGGATTGAG GTTGTGCGGG AACCTGCATC GGCAACGCCA
TCGGCCATGT CAGACGACGC GATGCGCAAC GTGATGGATC TTGTGGGCTC TGCGCCGTTG
AAAGATATCG TGTCGGCCAC CACAGATGTG GTGGAGAAGA TGTGCATCGA GACTGCCGTT
GAACTGACCG ACAACAACCG CGTCGCAGCG GCGGAAATGC TGGGCCTGTC GCGTCAGTCG
CTTTACGTCA AACTGCGCAA ATATGGGCTT TTGGCGAAGA ACGATTCCGG CACGTCTGGC
AAGGCGTAA
 
Protein sequence
MNTRGTDFWD KPSSPPIGPE QFSEIVTTAA DLAIVLDTGG KVHSVVTNPL NPTLGQLDHW 
KDRDIREFLT IESLPKIDAQ LSAYRDGVPA KVDAIEVNHS DNADWEFPIR YTLHKTSRDD
IILMLGRDLR PIAELQHRLV KAQLALEKDY ESHRDYETRY RVIMEAARDA MALVDVASGR
IVDVNGLGAQ ILGTDAEALT GAAFTQEFEG RRRGEFIEGL VNAASDEASQ VVTVKTRRTQ
ADVVLHPLVF RAAGDRTLLC RIETAGTAET VAAELAQVLS ALYRDGADAI VFTDAVGIIR
SANDAFLSLC DAGQIGDVRG KSIAEFLSRG SVDLKVLIDN ATRNKKMRLY STRLDGAFGS
QLSVEMSATL LNSGGTTGFA FVVRDISRIE VVREPASATP SAMSDDAMRN VMDLVGSAPL
KDIVSATTDV VEKMCIETAV ELTDNNRVAA AEMLGLSRQS LYVKLRKYGL LAKNDSGTSG
KA