Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_0164 |
Symbol | |
ID | 3932601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 156490 |
End bp | 157938 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637902506 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_508106 |
Protein GI | 89052655 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR02040] transcriptional regulator PpsR |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACGC GCGGAACAGA TTTTTGGGAT AAACCCTCGT CGCCTCCGAT TGGGCCCGAG CAGTTTAGCG AGATTGTGAC CACGGCAGCG GATCTGGCCA TTGTGCTGGA TACGGGCGGC AAGGTTCATT CTGTCGTCAC CAACCCGCTG AACCCCACCC TTGGACAGCT TGATCATTGG AAGGATCGCG ATATCCGCGA GTTCCTGACG ATTGAAAGCC TGCCCAAGAT CGACGCACAG CTCAGCGCCT ATCGGGACGG TGTGCCCGCC AAGGTTGATG CGATTGAGGT GAACCATTCC GACAATGCGG ATTGGGAATT TCCGATCCGA TACACGCTGC ACAAGACAAG CCGCGATGAC ATCATCCTTA TGCTTGGCCG CGATCTGCGC CCGATTGCGG AATTGCAGCA CCGGCTGGTG AAGGCGCAGC TGGCGCTGGA AAAAGACTAC GAGTCGCACC GGGATTATGA AACGCGCTAC CGTGTGATCA TGGAAGCGGC GCGCGATGCG ATGGCGCTGG TCGATGTCGC GTCTGGCCGG ATCGTCGATG TGAACGGGCT TGGCGCGCAA ATTCTGGGCA CGGACGCGGA GGCCCTGACC GGTGCCGCCT TTACCCAGGA ATTTGAAGGG CGTCGCCGGG GCGAGTTTAT CGAAGGCCTG GTGAATGCGG CCAGTGATGA GGCGTCTCAG GTCGTGACCG TGAAGACGCG CCGAACGCAG GCCGATGTCG TACTTCATCC GCTGGTCTTC CGCGCCGCTG GCGACCGGAC GCTTTTGTGC CGGATTGAAA CGGCAGGCAC GGCCGAGACG GTTGCGGCCG AACTGGCGCA GGTCTTGTCC GCCCTCTACC GCGATGGGGC CGATGCGATT GTGTTCACCG ACGCCGTTGG CATCATCCGG TCGGCCAATG ATGCCTTCCT CAGCCTGTGC GACGCCGGGC AGATTGGCGA TGTGCGGGGC AAGTCCATTG CCGAATTTCT GTCGCGCGGC TCTGTCGACC TGAAAGTTCT GATCGACAAC GCCACACGCA ACAAGAAGAT GCGGCTTTAT TCCACGCGTC TGGACGGGGC CTTTGGGTCG CAATTGTCGG TGGAGATGTC TGCGACCTTG CTGAACAGCG GCGGCACCAC GGGCTTTGCC TTCGTCGTGC GCGACATAAG CCGGATTGAG GTTGTGCGGG AACCTGCATC GGCAACGCCA TCGGCCATGT CAGACGACGC GATGCGCAAC GTGATGGATC TTGTGGGCTC TGCGCCGTTG AAAGATATCG TGTCGGCCAC CACAGATGTG GTGGAGAAGA TGTGCATCGA GACTGCCGTT GAACTGACCG ACAACAACCG CGTCGCAGCG GCGGAAATGC TGGGCCTGTC GCGTCAGTCG CTTTACGTCA AACTGCGCAA ATATGGGCTT TTGGCGAAGA ACGATTCCGG CACGTCTGGC AAGGCGTAA
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Protein sequence | MNTRGTDFWD KPSSPPIGPE QFSEIVTTAA DLAIVLDTGG KVHSVVTNPL NPTLGQLDHW KDRDIREFLT IESLPKIDAQ LSAYRDGVPA KVDAIEVNHS DNADWEFPIR YTLHKTSRDD IILMLGRDLR PIAELQHRLV KAQLALEKDY ESHRDYETRY RVIMEAARDA MALVDVASGR IVDVNGLGAQ ILGTDAEALT GAAFTQEFEG RRRGEFIEGL VNAASDEASQ VVTVKTRRTQ ADVVLHPLVF RAAGDRTLLC RIETAGTAET VAAELAQVLS ALYRDGADAI VFTDAVGIIR SANDAFLSLC DAGQIGDVRG KSIAEFLSRG SVDLKVLIDN ATRNKKMRLY STRLDGAFGS QLSVEMSATL LNSGGTTGFA FVVRDISRIE VVREPASATP SAMSDDAMRN VMDLVGSAPL KDIVSATTDV VEKMCIETAV ELTDNNRVAA AEMLGLSRQS LYVKLRKYGL LAKNDSGTSG KA
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