| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0040 |
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| Symbol | nusA |
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| ID | 3932476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 38314 |
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| End bp | 40086 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637902381 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_507982 |
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| Protein GI | 89052531 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.72674 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATCA CGTCAGCCAA CCAGCTGGAG CTTTTGCAAA CCGCAGAAGC CGTTGCCCGC
GAAAAGATGA TCGACCCCAA TCTGGTGGTC GAGGCGATGG AAGAAAGTCT CGCCCGGGCT
GCAAAGTCCC GCTATGGGTC CGAGCTGGAT ATCCGCGTTT CCATCGACCG CAAGACGGGC
CGCGCCACGT TCACCCGTGT GCGCACCGTG GCGGATGAAG ACACGCTGGA AAACGACAAG
GCCGAAATGC TGCTGGCCGA TGCCGACGCA ACGGTTGCCG CCGAGCGCCC CAATGTCGTG
GTCTTCAACG CCAAGTCCCA CGTCTATGAT GAGGAAGGCG AGGTTGTGGA GACCCGCGAC
GTGCGCCGTT TTGTCATGCG CAAGCCGACC GAGAATGACA AGCTCCTGAC CGAGGGCGTG
GATCAATCCA CCGGCCCCGT GATCGGTGAC ATGATCGCCG ACGAAGTGCC GCCCGTGGAA
ATGGGCCGGA TCGCCGCGCA ATCGGCCAAG CAGGTCATTT TGCAGAAGGT CCGCGAAGCC
GAGCGTGACC GTCAGTTCGC CGAGTTCAAG GACCGTGTGG GCGAGATCAT CAACGGCGTC
GTCAAGCGTG AGGAATACGG CAACGTCATC GTCGACGTAG GCTCCGGTGA GGCGCAGCTG
CGCCGCAACG AGAAGATCGG GCGGGAAGCC TATCGCAACG GCGACCGCAT TCGCTGCTAC
ATCAAGGATG TGCGCCGTGA GAACCGCGGC CATCAGATCT TCCTGTCGCG CACCGCGCCG
GAGTTCATGC GCGAGTTGTT CAAGATGGAA GTGCCCGAGA TCTATGACGG CATCATCGAG
ATCAAGGCCG TCGCCCGCGA TCCCGGGTCG CGTGCCAAGA TTGCGGTGAT TTCCTATGAC
AATGGCATCG ACCCCGTGGG CGCCTGTGTG GGTATGCGCG GCAGCCGGGT GCAGGCTGTC
GTCAACGAAT TGCAGGGCGA AAAGATCGAC ATCATTCCGT GGAATGAGGA TGCGCCGACG
TTCCTGGTGA ATGCGCTGCA ACCTGCCGAG GTCTCCAAGG TGGTTCTGGA TGAGGACGCC
GGGAAGATCG AAGTCGTGGT GCCCGATGAG CAGCTGAGCC TTGCCATTGG TCGGCGCGGT
CAGAACGTGC GTCTTGCCTC ACAGCTGACC AACCTTGATA TCGATATCCT GACCGAGGAA
GAGGAATCCA AGCGTCGTCA GGCCGAGTTT GAAGAGCGCA CGAAGCTGTT CATGGATACG
CTCGACCTGG ATGAGTTCTT CGCGCAGCTT CTGGTCTCCG AAGGCTTCAC GGCGTTGGAA
GAAGTGGCCT ATGTGGAAGC GGACGAGCTT CTGGTCATCG ACGGCGTTGA TGAGGGTACT
GCGGAAGAAT TGCAGGCCCG CGCCCGCGAT TATTTGGAGG CGCAGAATAA ACTGGCGCTT
GAGAAGGCGA AAGAGATGGG CGTTGAAGAG AGCCTCATTG CATTTGAGGG CCTTACTCCC
CAAATGTTGG TGGCCTTGGG CGAAGACGGC GTGAAAACGC TGGAAGACTT CGCTACCTGC
GCAGATTGGG AACTGGCCGG CGGTTGGACA ACCGAAGGCG GAGAGCGCAT CAAGGACGAC
GGCCTTTTGG AGCCCTTCGA AGTCTCTTTG GAAGAAGCAC AGAACATGGT GATGACCGCA
CGCCTGCAAC TGGGTTGGGT GACGATCGAG GAATTGGAAG CCGACGCCGC TGCCGAAGCA
GAAGCCGCCG CACAGGAGGG GGCAGAGGGC TAA
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| Protein sequence | MAITSANQLE LLQTAEAVAR EKMIDPNLVV EAMEESLARA AKSRYGSELD IRVSIDRKTG
RATFTRVRTV ADEDTLENDK AEMLLADADA TVAAERPNVV VFNAKSHVYD EEGEVVETRD
VRRFVMRKPT ENDKLLTEGV DQSTGPVIGD MIADEVPPVE MGRIAAQSAK QVILQKVREA
ERDRQFAEFK DRVGEIINGV VKREEYGNVI VDVGSGEAQL RRNEKIGREA YRNGDRIRCY
IKDVRRENRG HQIFLSRTAP EFMRELFKME VPEIYDGIIE IKAVARDPGS RAKIAVISYD
NGIDPVGACV GMRGSRVQAV VNELQGEKID IIPWNEDAPT FLVNALQPAE VSKVVLDEDA
GKIEVVVPDE QLSLAIGRRG QNVRLASQLT NLDIDILTEE EESKRRQAEF EERTKLFMDT
LDLDEFFAQL LVSEGFTALE EVAYVEADEL LVIDGVDEGT AEELQARARD YLEAQNKLAL
EKAKEMGVEE SLIAFEGLTP QMLVALGEDG VKTLEDFATC ADWELAGGWT TEGGERIKDD
GLLEPFEVSL EEAQNMVMTA RLQLGWVTIE ELEADAAAEA EAAAQEGAEG
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