| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4280 |
|---|
| Symbol | |
|---|
| ID | 3932432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007801 |
|---|
| Strand | + |
|---|
| Start bp | 77871 |
|---|
| End bp | 78908 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637902337 |
|---|
| Product | GDP-mannose 4,6-dehydratase |
|---|
| Protein accession | YP_512220 |
|---|
| Protein GI | 89057766 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1089] GDP-D-mannose dehydratase |
|---|
| TIGRFAM ID | [TIGR01472] GDP-mannose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAA CAGCCTTGAT CACAGGCATC ACGGGGCAGG ATGGCGCCTA TCTGGCAGAG
CTGTTGTTGT CCAAAGGCTA CAAGGTCTTT GGGACCTTTC GGCGCGTGGT TTCGACCAAC
TTCTGGCGGA TTGAGGAATT GGGTCTCAGG GATCATCCCA ATCTGTCGCT TGTGGAATTT
GACCTGACCG ATATGGGCTC GACGATTCGG CTTATTGAGC GCACCGAGCC AGACGAGATT
TATAACCTGG CGGCCCAAAG CTTTGTCGGT GTGTCCTTCG ACCAACCTCA CACGACGTCA
CAAATTACCG GTGTGGGTGT GCTGAACCTG CTGGAAGCGG TCCGGATCGT GAACCCCAAG
ATCCGCTTCT ATCAGGCGTC GACCTCCGAG ATGTTCGGCA AGGTGCAAGA GATCCCGCAG
CGTGAAACCA CGCCCTTCTG GCCCCGCTCG CCCTATGGCA TTGCCAAGCT CTACGGGCAT
TGGATGACGA TCAATTACCG CGAAAGCTAC GATATCTTTG GCGCGTCGGG CATCCTGTTC
AACCATGAGA GCCCCCTGCG CGGTCTGGAA TTCGTGACCC GCAAAATCAC CGATGGCGTG
GCGAAGATCA AACTGGGCAA GCTGGATTGC CTGGAACTGG GCAACCTTGA CGCCAAGCGC
GACTGGGGAT TTGCCAAGGA TTACGTCGAT GGCATGTGGC GTATGTTGCA AGCGGACACG
CCGGACACCT ACGTTCTGGC CACCAACCGG ACGGAGACGG TCCGCGATTT CGTGACCATG
GCGTTCAAGG GCGCGGGGAT TGAATTGCGG TTTGAGGGTG AGGGCGAGAC TGAGACTGCG
GTAGATACGG ACTCCAACAA GACGCTGGTT CGCATCAGCC CAAAATTTTA CCGCCCCGCA
GAGGTCGAGC TGCTGATCGG GGATCCGACC AAGGCCAAAA CCGATCTGGG GTGGGAGCCG
CAAACCACCC TTGAAGAACT CTGCGCCATG ATGGTGGAAG CTGATCGTGT GCGAAACGTG
AACGGCGTGT CCTTTTAA
|
|---|
| Protein sequence | MTKTALITGI TGQDGAYLAE LLLSKGYKVF GTFRRVVSTN FWRIEELGLR DHPNLSLVEF
DLTDMGSTIR LIERTEPDEI YNLAAQSFVG VSFDQPHTTS QITGVGVLNL LEAVRIVNPK
IRFYQASTSE MFGKVQEIPQ RETTPFWPRS PYGIAKLYGH WMTINYRESY DIFGASGILF
NHESPLRGLE FVTRKITDGV AKIKLGKLDC LELGNLDAKR DWGFAKDYVD GMWRMLQADT
PDTYVLATNR TETVRDFVTM AFKGAGIELR FEGEGETETA VDTDSNKTLV RISPKFYRPA
EVELLIGDPT KAKTDLGWEP QTTLEELCAM MVEADRVRNV NGVSF
|
|---|
| |