| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4274 |
|---|
| Symbol | |
|---|
| ID | 3932426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007801 |
|---|
| Strand | - |
|---|
| Start bp | 70326 |
|---|
| End bp | 71000 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637902331 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_512214 |
|---|
| Protein GI | 89057760 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain
[TIGR03370] variant PEP-CTERM putative exosortase signal, Roseobacter type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000000240713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.501804 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGAT TTTCCGCGTT AGCCGCCGCT GCGCTCATTG CATTCTCAAC CGCCGCGACA
GCATTGCCTG TTGGTATTAC GGCCACTGGC ACTCTCTTCG CAAACGGAGA TGAAGCCATT
GCGACTCAGG CTTCCGGCTA CACCGCAAAC ATTCCCGACG GTGCCACGTG GGACATTGAC
CCGACGGTCA CGGTCCCGCC TGGAAACGAT ATAGACGATT CGATGTCGCC CTTCGCTGGG
ACATCCCTTG AAAATGTGAA CAGCTACTTC GCTACTCGTG TCAGAACAGG TGCGAACAGC
GGCGCGACCA CATCCCCTGT CACGTTGACC CTCGGGTCGG CCATAACGAC ATTCGATATG
CTTTGGGGCT CGATCGACGA CTACAATACG CTGACATTCT CCGGCGCATC CGGCAGCGTT
TCCGTCACCG GCACCGAAAT TGCTGATTTC TTCGGCCTCA CGACCCCGAC ACCTGGTACG
AACGGCAACT ATCATCATAC AGCACTGCTG ACTTTCACCT TGGATAGTGC ATTTGATACT
GTGGAATTTG CATCCGATAA TATTGCCTTC GAATTTGCCT TGGCACCAGT TCCGCTTCCT
GCGGCAGCAT GGATGCTTCT GGCAGGTCTT GGCGGGCTCT TCGCGATGCG CCGTCGTCAG
GCAGCCACTG CCTGA
|
|---|
| Protein sequence | MFRFSALAAA ALIAFSTAAT ALPVGITATG TLFANGDEAI ATQASGYTAN IPDGATWDID
PTVTVPPGND IDDSMSPFAG TSLENVNSYF ATRVRTGANS GATTSPVTLT LGSAITTFDM
LWGSIDDYNT LTFSGASGSV SVTGTEIADF FGLTTPTPGT NGNYHHTALL TFTLDSAFDT
VEFASDNIAF EFALAPVPLP AAAWMLLAGL GGLFAMRRRQ AATA
|
|---|
| |