| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4254 |
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| Symbol | |
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| ID | 3932406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007801 |
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| Strand | + |
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| Start bp | 43997 |
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| End bp | 45394 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637902311 |
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| Product | polysaccharide biosynthesis protein |
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| Protein accession | YP_512194 |
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| Protein GI | 89057740 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.16434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCAC CCAAAAAGGT CCCTGTTTTC AAGGAACACT GGGCCACGAT CCGGAACCTT
GGAAGCGGTA GTGGCCTGCG GGCCCGCGCC GAGCGCGCAA CCGTGTGGAC GATGTTGGAT
TTCGGCTCGA ACAACGGGCT TCGTCTCGTT TCGAATCTGA TCCTGACACG TATACTCACG
CCGGAAATAT TTGGATTGAT GGCGATCGCG CAGGTCTACT TCCAAGGAGT GAAAATGCTC
TCGGACATTG GGACGCGCGC CTCCATCATC CGAAGCGACC GTGGTGATGA CACAACTTTC
CTGCGCACGG TCTGGACTCT GAACATTCTG GTGGGGATCG CGGTCTGGGC CGTGACCTCT
ATGATCGCCT GGCCAGTCTC GATCATATAC CAGCAGCCAA TTCTGCTTCC GCTACTTTGT
GTCATGTCTC TGGTGGCCGT CGTGGGCAGC TTCACTTCAA TATCGGCCGC CCGTGCGAAT
CGTCACCTCA ACCTTCGCAA ACTGACCCTC ACGAACTTCA CGGGTAAGAT CTTGTCGATT
ATTGTCACCA TTTTTGCCGC ATGGACGATG GAATCTGTCT GGGCTTTGGT GATCGGCACC
TTTGCGGGGG TGATCACCAC CACGATCCTG TCCCATATCG TCCTCCCCGC GTTTGACCAC
AAATTTCAGC TAGAGCGCGA AACCCTCCGC GAAGTGTTCA GTTTTGGAAT CTGGATACTG
GCTGGAACGA TGTTGGGTTT TATCGGCGAC AAGGGCCAAC AAGCCTTGCT AGGGACGCTT
GTGCCCATCG CTACCTTGGG AAAAATCTCG ATTGCGGCCA TGCTCGCTGC CTTGCCCTTG
ACCCTTTTGA ATGGCCTTTT GAGCGGAGTC ATATTTCCAG CCTACTCTGA AATTCGCCGC
AAACGGCCCC AAGATCTGCC TGCAACCCTG GCCAAGGTGC GTCGTGCGAC GGCGGGCGCA
GGATTGCCAC TCTTTTTGAT GGTAGCATTC CTAGGTCAGC CGATCATCGA TCTGCTCTAT
GATGATCGCT ATACCGAGGC GGGCGTGTTC CTGTCGTTTT TCGCACTGAA CGGCGCCATA
TTTCTGTTGA CCCAGCCCTA TCAGAACCTT CTTCTGGCCG ATGGTCGCAG TGATTTGCAT
GCACTTCTGA ACGGCGTTTT GGCTGCAGCA GTCGTTTGCG GCATATTTCT GGGCTTTTAC
GTATATGGCA TTCTGGGCGC GATTGTAGGC ATCGCGCTGG GTTTCACGCT GCATTTCTCC
ATCAATCTGG TGATCGCCTG GAGGCGTGGC TATGCCACTG GCACAATCGA TACGATGGCC
TTGGCGGTCA TTGCCGCTGC CTATGGACTG ATGCTGTACA TGCGCGACAT TCCAGTCGGA
TTTTTCCCGG CGGGCTGA
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| Protein sequence | MEPPKKVPVF KEHWATIRNL GSGSGLRARA ERATVWTMLD FGSNNGLRLV SNLILTRILT
PEIFGLMAIA QVYFQGVKML SDIGTRASII RSDRGDDTTF LRTVWTLNIL VGIAVWAVTS
MIAWPVSIIY QQPILLPLLC VMSLVAVVGS FTSISAARAN RHLNLRKLTL TNFTGKILSI
IVTIFAAWTM ESVWALVIGT FAGVITTTIL SHIVLPAFDH KFQLERETLR EVFSFGIWIL
AGTMLGFIGD KGQQALLGTL VPIATLGKIS IAAMLAALPL TLLNGLLSGV IFPAYSEIRR
KRPQDLPATL AKVRRATAGA GLPLFLMVAF LGQPIIDLLY DDRYTEAGVF LSFFALNGAI
FLLTQPYQNL LLADGRSDLH ALLNGVLAAA VVCGIFLGFY VYGILGAIVG IALGFTLHFS
INLVIAWRRG YATGTIDTMA LAVIAAAYGL MLYMRDIPVG FFPAG
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