| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4226 |
|---|
| Symbol | |
|---|
| ID | 3932378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007801 |
|---|
| Strand | + |
|---|
| Start bp | 10385 |
|---|
| End bp | 13387 |
|---|
| Gene Length | 3003 bp |
|---|
| Protein Length | 1000 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637902283 |
|---|
| Product | conjugal transfer relaxase TraA |
|---|
| Protein accession | YP_512166 |
|---|
| Protein GI | 89057712 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0036143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCT ATCATCTTCA TGTGAAGGTC ATCGGGCGCG CAGCTGGCTC AAGCGCGGTT
GCGTCCGCTG CTTACCGGTC AGCGTCCCGG CTGCGTGACG ACCGGATCGA GCGCAGCCAT
GACTTCACAG CCAAGCGTGG CGTTGTTCAT TCGGAGGTGA TGTTGTCGGA GAATGCGCCC
GAGGCTTGGG GCGACCGCGA ACAGCTCTGG AATGCCGTCG AGGCGGGCGA GCTTCGCAAG
GACGCGCAAC TGGCGCGCGA GGTGGAGTTC GCCATTCCGC GCGAGATGAC GCAGGCGCAG
AGCATCGCGC TGGCCCGTGA TTTTGTCCAA TCGGAGTTTG TGGCTCAGGG CATGATCGCC
GATCTCAATG TGCACTGGGA GCGCGGCGAA GATGGGACAC TCAAACCCCA TGCCCATGTG
ATGCTTACGA TGCGCGAGGT CGAGGGAGAT GGCTTTGGTC AAAAGGTCCG GGACTGGAAC
CGGACAGCGC TGATCGAGCG CTGGCGGGAG TGTTGGGCGG ACCTTGCCAA TGCGCGGATG
GCCGAACTCG ACATCGATGC GCGGATCGAC CATCGGAGCC TAGAGGACCA AGGGATCGCG
TTGGAGCCGC AGAGCCAGAT CGGGGCGCCT GCGCAGAGGA TCGCAGGTGA GGGCAGCGCC
GCCGATCGCG CCGAGATGCA CCGCGAGATT GCGCGGGACA ACGGCGAGAG GATCATCGCC
AATCCCGCGC TGGCGCTGGA GGCCATCACC CATCAGCAAT CGACCTTCAC GGACCGCGAC
ATGGCGCGGT TTGCGCATCG TCACAGCGAC GGGATCGATC AGTTCAACGC GGTGTTGGAT
GAGGTGCGCC GCGCGCCGAA TTTGGTGGCT TTGGGTCAGG ACGGGCGGGG TGAGGACCGG
TTCACGACAC GGGCCATGGT CGAAGCAGAG CGGCGCCTGC ACCGCGCGGC GCACCGAATG
GCAAAGACGG ACCGTCATAA TGTGCGAGAG GATCTCCGGA AGGCGGCGAT GGCGCACGCG
GAAGAGCGTG GCCTGGTGTT GTCTGGCGAG CAGGCCGATG CGCTGGCCCA TGTGACCGGC
GGTCGTGATC TGGGCCTTGT TATTGGTCCG GCCGGGACGG GAAAGGGCGC AATGCTCGGC
GTGGCGCGAG AGGCCTGGGA AGTTGAAGGG TATCGGGTCC GAGGTGCGGC ATTGTCGGGG
ATCGCGGCGG AGGGTCTCGA AGGTGGATCC GGCATCGTAT CGCGCACCAT TGCCAGTCTC
GAACACGGTT GGGAAAGAGG TCGCGACACG CTGACCACCC GCGATATCCT GGTGATCGAT
GAGGCCGGCA TGGTCGGCAC GCGGCAGCTG GAGCGCGTGC TGTCGCATGC GGTAGATGCC
GGGGCCAAGG TTGTGCTGGT GGGCGATCCA CAGCAGTTGC AATCGATCGA GGCTGGTGCT
GCTTTCCGCG CGCTTCACGA GCGTTATGGC GGGGCACGGA TCGACGAGGT TCGCCGCCAG
CACGAAGACT GGCAGCGCGA GGCCACCCGC GATCTCGCAT CCGGGCACGT CGGCATGGCG
ATCCAAACTT ACGATGGCCA CGACATGGTG CATGCCGCCG AGACGCGACA GCAGGCGCGC
GAGGATCTGA TCGACAGATG GGATCGGGAG CGGCAGGCAG CACCAGATGA GAGCCGGATC
ATCCTGACCC ACACGAACGC CGAGGTGCAG GCCCTGAACG AGTTGGCCCG AGAGAAGATG
CGGGCGGTGG GGGACTTGGG TGAGGAGGTT GACCTATCCG TCGAACGGGG TGATCGGCGC
TTTGCCAGCG GTGATCGTGT CATGTTCCTG CAAAACGATC GGGGCCTCGG GGTGAAAAAC
GGCACCCTTG GAACGATTGA GGCAGTCAGC GTTCGAAGCA TGACGGTCCA AGCAGACGGC
GGACGTGCCA TCACCTTCGA CCTCAAGGAT TATGACCGAA TTGACCACGG CTATGCCGCG
ACCATCCACA AGGCCCAGGG CATGACCGTG GACCGCACCC ATGTACTGGC CACGCCGGGG
CTGGATGCCC ATAGCAGCTA TGTCGCCCTG TCACGGCATC GGAATGGCGT GGATCTGCAC
TACGGCCAAG ACGACTTCGC CACGACCGCG CGGCTGATCC GCACACTGTC CCGCGACCGG
GCCAAGGAAA TGGCGCTGGA TTACGAAGCG GAGGATCCGA TGCAAGCCTA TGCCGAGCGG
CGGGGCATCA GCTTCAAGGA TCGGGTCATC GAGATTGCGC ACAAAGTGCT GCCGGAGAAG
CTACGTGATG GGGTTGATGG TCTGCTGACC GGAGCGCGCT CCCCCGGAGA CGGCGCGACC
GGACGGGAGG GCGAGCCGGG GCCGCGACGG GACACAGCGA CTGCGATGGA CAGGCCGCTC
GAAGGCCCAT CACCAGCAAG CGAGCCCGGC GGGGATCCGG AGAAGGCCGT TCGGATCGCC
CGCACGAAAG CGCTGGTCCG TCATGCCCAG GCGTTCGATG CCGTCATCAG CGCAGAGGAG
GCTGAGTTCA GAACCAATCC AACCTACAAG CAAGAGCTGA CCGCCGCGCG CAAGGCGTTC
GAAGAGGTGC GGCCCTACGG CTGGCACGAT GCCGAGGCGG CCTATGCCAA GGAACCCACC
CTGGCCCACG AGGCAGGATC GGGCCAAGTC AATCGGACCA TCCGCGCCCT GCATATGGAG
ACGGAGCTCC GCACCGATCA GACCCGGGCT GACAGCTTCG TCGAGCGCTG GCAGAAGCTC
GACCGGGCCA ACGAGCGCCA CTACCAGGAA GGAAACTACG CCAAACGCGA ATCAACGCAG
GAGGCGATGC AAGGCATGGC GCGCAGCCTC GAACGCGATC CGCAGCTGGA ATCCCTTTTG
GCCAACCGCA AGCGCGACCT TGGGATCACG TTCGACACTG GCCACAAAAG CCTTGGCCGC
GATCTCGCGA TCAACCACGG CCTCGATCAC GAGCTTAGCC GCAGCCGCGG CCTCAGCCGC
TGA
|
|---|
| Protein sequence | MAIYHLHVKV IGRAAGSSAV ASAAYRSASR LRDDRIERSH DFTAKRGVVH SEVMLSENAP
EAWGDREQLW NAVEAGELRK DAQLAREVEF AIPREMTQAQ SIALARDFVQ SEFVAQGMIA
DLNVHWERGE DGTLKPHAHV MLTMREVEGD GFGQKVRDWN RTALIERWRE CWADLANARM
AELDIDARID HRSLEDQGIA LEPQSQIGAP AQRIAGEGSA ADRAEMHREI ARDNGERIIA
NPALALEAIT HQQSTFTDRD MARFAHRHSD GIDQFNAVLD EVRRAPNLVA LGQDGRGEDR
FTTRAMVEAE RRLHRAAHRM AKTDRHNVRE DLRKAAMAHA EERGLVLSGE QADALAHVTG
GRDLGLVIGP AGTGKGAMLG VAREAWEVEG YRVRGAALSG IAAEGLEGGS GIVSRTIASL
EHGWERGRDT LTTRDILVID EAGMVGTRQL ERVLSHAVDA GAKVVLVGDP QQLQSIEAGA
AFRALHERYG GARIDEVRRQ HEDWQREATR DLASGHVGMA IQTYDGHDMV HAAETRQQAR
EDLIDRWDRE RQAAPDESRI ILTHTNAEVQ ALNELAREKM RAVGDLGEEV DLSVERGDRR
FASGDRVMFL QNDRGLGVKN GTLGTIEAVS VRSMTVQADG GRAITFDLKD YDRIDHGYAA
TIHKAQGMTV DRTHVLATPG LDAHSSYVAL SRHRNGVDLH YGQDDFATTA RLIRTLSRDR
AKEMALDYEA EDPMQAYAER RGISFKDRVI EIAHKVLPEK LRDGVDGLLT GARSPGDGAT
GREGEPGPRR DTATAMDRPL EGPSPASEPG GDPEKAVRIA RTKALVRHAQ AFDAVISAEE
AEFRTNPTYK QELTAARKAF EEVRPYGWHD AEAAYAKEPT LAHEAGSGQV NRTIRALHME
TELRTDQTRA DSFVERWQKL DRANERHYQE GNYAKRESTQ EAMQGMARSL ERDPQLESLL
ANRKRDLGIT FDTGHKSLGR DLAINHGLDH ELSRSRGLSR
|
|---|
| |