| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH_0970 |
|---|
| Symbol | |
|---|
| ID | 3927335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ehrlichia chaffeensis str. Arkansas |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007799 |
|---|
| Strand | + |
|---|
| Start bp | 992890 |
|---|
| End bp | 994407 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 637902086 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_507757 |
|---|
| Protein GI | 88658225 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.995954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAAA AACTCAAAAA TCTCATAAAA GTAGGGTTTT CACTACCAAA ACTTTTAGGA
CATAACACAC TACATCTAGA AGATAGTGAA GAAAAATCAA GATCAAGCAT ACTAACTAAA
TCACTGTTTA TTATAGACAA CATAATAAAC TTTTTATTTA AGTACAACAG AAAGGATTCA
GTAAATGAGG TATTGAAAAT ATCATGGGGT CCGCTATTCA CTGGATTTAT CATTATTTTA
CTCTTTTTTG GCATATTTGG AATATGGTCT GCAGTAGCAC CACTCGATGG ATCAGTAATT
GCACAAGGAG AAGTTATTCC TTCATCAGAA AAACAAATAA TCCAACATTT AGAAGGTGGC
ATCATTAATA AGATCCTAGT CAAGGAAGGA GAATTAGTAC AAAAAAATCA GCCTATAATA
TCTTTACATA ATACTACAGC TAAAGCCAAT CTAGACATTA TAAAAGAACG AGTACTTGAT
CTATTAGCAA CAGAGGCTAG GTTAGTTGCT ATAAAATACA ATTATGAATC TCTAATCTTT
CCAGACACTC TAAAAAATCT ATCAGATGAA AAAACAAGAA TACAAATAAT AAAAAATCAG
CAACAGTTAT TTGAGTCGCA CAAGAAGAAC GTATCCGGAC AAATAGATAT TTTACAACAA
CGTATAAAAC AGCTACACCA AGAATTATCC GGGTTATCTG CTCAACTAAC TTCAGCAATC
ACTCAACATA AATTAATTAA TGAAGAATTA GAAACAAAAA AAAGCCTGTT AGAGAATGGA
TATATTAGCA AACCATATAT TATTGCACTT GAACGTCAAT ATGCTGAATC CAAAGGGAAA
ATAGGACAAA TTAAATCTGC TATTGCATCA GTAAATCAAA AAATTGGAGA AAATAAATTA
GAAATAATTA ATATTACCAA CAATGTGCAA AATAAAATCA ATCTTGAACT TAAAGATGTA
ACATCTGCCA TAACAGACCT AAAAGAAAAG ATGAAAACTG CTCAAGACAT ATTGGATAGA
ACTATAATAA GGTCTCCTCA AGCCGGCATC ATAACAGGAT TAAAATACCA CACAGAAGGT
GGAGTAATAC CTCCTGGAGC TCCCATAACA AACGTTGTAC CACTAAATGA CGATTTAATT
ATAGATGCAA AAATACAAAC AAGGCATATT GAAGAAATTC TATCTGCACA AATGAAAGAT
AAAAATATAG TATCATATGA GAACTATCAT GGATTAAAAG CAAAAGTACG CCTAAGTGCA
TATAACATAC GTAAAATTGG ATTAGTAAAT GGAATAGTAG TACAAGTATC AGCTGATGCT
TTAAGTGAAG TCAATGGAAT GCGTTACTAT AAAATACAAG TAATAATACC AAAAGAACAA
TCTGCAAAGC TAAAAAATTT AAAATTGTAT CCTGGAATGC CAGCAGAAGT TTTTATAATT
ACTCAATCTC GCACTTTGTT TAACTATCTG TTCACTCCAA TAACTAGTAC TTTTGAAAAA
GCTTTTAATG AAAGATAA
|
|---|
| Protein sequence | MYQKLKNLIK VGFSLPKLLG HNTLHLEDSE EKSRSSILTK SLFIIDNIIN FLFKYNRKDS
VNEVLKISWG PLFTGFIIIL LFFGIFGIWS AVAPLDGSVI AQGEVIPSSE KQIIQHLEGG
IINKILVKEG ELVQKNQPII SLHNTTAKAN LDIIKERVLD LLATEARLVA IKYNYESLIF
PDTLKNLSDE KTRIQIIKNQ QQLFESHKKN VSGQIDILQQ RIKQLHQELS GLSAQLTSAI
TQHKLINEEL ETKKSLLENG YISKPYIIAL ERQYAESKGK IGQIKSAIAS VNQKIGENKL
EIINITNNVQ NKINLELKDV TSAITDLKEK MKTAQDILDR TIIRSPQAGI ITGLKYHTEG
GVIPPGAPIT NVVPLNDDLI IDAKIQTRHI EEILSAQMKD KNIVSYENYH GLKAKVRLSA
YNIRKIGLVN GIVVQVSADA LSEVNGMRYY KIQVIIPKEQ SAKLKNLKLY PGMPAEVFII
TQSRTLFNYL FTPITSTFEK AFNER
|
|---|
| |