Gene ECH_0760 details

Gene Information

• Locus tag: ECH_0760
• Symbol: rpoD
• ID: 3927201
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ehrlichia chaffeensis str. Arkansas
• Kingdom: Bacteria
• Replicon accession: NC_007799
• Strand: +
• Start bp: 766191
• End bp: 768059
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 637901878
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_507558
• Protein GI: 88657966
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.856067
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGATC TACAAACAGA TAAAGAATTA CTCAGAACTC TTGTGAGTAA GGGACTCAAA 
CAAGGATTTG TTACATTTAA CGATATCAAC GATGTTTTTT CTGACTACGT GCTGTCATCT 
GACAACATAG ATGAAACTAT ATCAATGCTT CAGGATTCAG GTATTAATGT TCTTGAACAA 
AGTGATGAAG ACGAGGCAAA TAGCATAATA GAAGAAAACA GAATCAAAGA TGAAATGGAC 
GAAGATGATG TATCAGACAC CAGTATAAAA TCTTGGGATT TTGGACAAAC AGATGACCCT 
ATACGCATGT ACCTATGTGA AATGAGTTCT GTTGAATTAC TATCTCGTGA AGGAGAAATT 
GAAATTGCCA AAAAGATCAA ATCAGAAAAA GTAAATATGC TCAGGTCACT AGTAGAATCC 
CCAATAGTAT TACGTACATT TATGTCATGG AGGGATGACT TAGTAAATGA ACAAATAATG 
TTAAGAGATT TAATAGATTT AGATGCAAAT TACAGGTATG AATTTCCTGA AAAATTTTCT 
GACACTGATG ATGCTAGTGT TTTAGGTTAT GATAAAGATT TAATGGATGA ACCTGATGAA 
GATCCAGATA TACCAGAAGA TGAAGATGAA GAAAACATTT CAATAAATGC TTCAATATTA 
GAAATGGAAA ATGCATTGCT ACCCAAAGTA GTAAGCATCT TAGATTCAGT AATTGCATCA 
GCAGAAAAAA TTTTAGAACT CAAAAAACAA TATCAAGGTA AAATTAACCA AGATATTGAA 
AAACAATACA ATGACTTACA CGATAGCATA TGGGAAATGA TATATCAAAT TAAACTTAGT 
AATTCCGCAG TCCTATCAAT CACACAACAA ATATATAGCT TAAGTAAATC AATAGCAGCA 
GAAGAGGCAA AAATTATTTC CCTTGCAGAA AGCTATGGTA TACAACGCAA AGACTTCTTA 
GATGCATATA ATACTAATTC TGTATTGCAA AAAAAAGGCA CTTCTCCTCA ATGGGATAAC 
ATGTTACTCA ATGAAGAGAG TAATATAGTA AGTATGTACA GTAAAATTAA GCTACTGTCT 
GGAGAAAATA ACCTTACCGA ATTCAAAGCA TTAGTCACAA AAATACAAAA GCACGAACGT 
GCAGCAAATC AAGCAAAGCA AGAAATGATA AAAGCAAATC TAAGGTTAGT AGTATCGATT 
GCAAAAAAAT ATTCAAATCG AGGTTTACAG TTTCTAGATT TAGTACAAGA AGGGAATATT 
GGCTTAATGA AAGCAGTAGA TAAATTTGAT TACAAACGTG GATATAAATT CTCAACTTAT 
GCAACGTGGT GGGTGAGGCA AGCTATCACT AGAGCAATAG CAGATCAGGC ACGAACTATT 
AGAATTCCTG TACACATGAT TGAAACAGTA AATAAAATCA ATCGCACACT AAGACAAATG 
CTACACGAAA TGGGTAGAGA ACCAACATTA GAGGAATTAT CAGCAAGATT AAACATTAAT 
GTAGATAAGA TACGTAAGGT AATGAAAATA GTTAAAGACC CCGTAAGCTT AGAAAGCCCC 
ATAGGAGATG ATGACAGTAG TACCTTTGGT GATTGCATAG AAGATAAACG TGCAGTAAAG 
CCAGAAGATG CAGCAGTACT TGCAGACTTA CGAGAAATAA CTACAAAAGT ATTATCAACA 
TTAACACCAA AAGAAGAGAG AATCTTACGT ATGCGGTTTG GAATAGGTAA AGGTGGAAAA 
GACCATACCT TAGAAGAAGT AGGAAAACTA TTCAATGTAA CAAGAGAACG TATACGACAA 
ATTGAAGCAA AAGCTTTACG TAAACTACGT CATCCAAGTC GTGCAAGAAA GCTTAGAGGA 
TTTTTCTAA 

 

Protein sequence

MKDLQTDKEL LRTLVSKGLK QGFVTFNDIN DVFSDYVLSS DNIDETISML QDSGINVLEQ 
SDEDEANSII EENRIKDEMD EDDVSDTSIK SWDFGQTDDP IRMYLCEMSS VELLSREGEI 
EIAKKIKSEK VNMLRSLVES PIVLRTFMSW RDDLVNEQIM LRDLIDLDAN YRYEFPEKFS 
DTDDASVLGY DKDLMDEPDE DPDIPEDEDE ENISINASIL EMENALLPKV VSILDSVIAS 
AEKILELKKQ YQGKINQDIE KQYNDLHDSI WEMIYQIKLS NSAVLSITQQ IYSLSKSIAA 
EEAKIISLAE SYGIQRKDFL DAYNTNSVLQ KKGTSPQWDN MLLNEESNIV SMYSKIKLLS 
GENNLTEFKA LVTKIQKHER AANQAKQEMI KANLRLVVSI AKKYSNRGLQ FLDLVQEGNI 
GLMKAVDKFD YKRGYKFSTY ATWWVRQAIT RAIADQARTI RIPVHMIETV NKINRTLRQM 
LHEMGREPTL EELSARLNIN VDKIRKVMKI VKDPVSLESP IGDDDSSTFG DCIEDKRAVK 
PEDAAVLADL REITTKVLST LTPKEERILR MRFGIGKGGK DHTLEEVGKL FNVTRERIRQ 
IEAKALRKLR HPSRARKLRG FF