Gene ECH_0169 details

Gene Information

• Locus tag: ECH_0169
• Symbol: ribD
• ID: 3927940
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ehrlichia chaffeensis str. Arkansas
• Kingdom: Bacteria
• Replicon accession: NC_007799
• Strand: +
• Start bp: 158116
• End bp: 159198
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637901293
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_506994
• Protein GI: 88658608
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATACGTT ACGATAAGAA ATTTATGTCT TTAGCATTAA GGATTGCAAG ACGTGGTCTT 
GGTAATGTAT TTCCTAATCC GGCTGTTGGA TGTATTGTGG TGAATCATGG AATGGTGGTA 
GGACGTGGAT ATACACAAGT TGGTGGTAGG CCACATGCAG AAGTTATTGC ATTAAATAAT 
GCTGGGCATT TAGCAAAAGG TTCTACTGTA TATGTAACTC TTGAGCCATG CTCCCATTAT 
GGGCAAACAG GCCCTTGTGC ATTAAAGTTA ATAGATGCTG GTGTTAAACG GATGGTAATA 
GCTGCTAAGG ATCCTGATGT GCGTGTTTCT GGAAATGGTA TAGAATTATT ACGTAATGCG 
GGTATAGATG TAAAGTGTGG TGTCATGTAT GAAGAGGCAC GAGAATTAAA TATTGGTTTT 
TTTTATAGTA AAATCAAGAA TAGACCTTTT ATTACAGTGA AGTTAGCATC TACTTTAGAT 
GGGAAAATAG CGTTAAAAGA TGGTAATAGT CGATGGATTA CAAATGAGTT AACTCGTAAT 
TGGGTACATA AACAGCGTTC TATGTATGAT GCAATTATGG TTGGTAGTAA TACTATTGTT 
CAAGATAATC CAATGCTTAA TACTAGGCTT CCTGGTTTAG AGTGTTATTC TCCAGTAAGG 
ATAGTAATTG ATCGTTTTGG TAAAGTTTGT GACTATCATA ATATCATAAA AACTTCTGAT 
GTTATCCCTA CGTATATTTT GACAAATGAT GTTCCTCAAA CAAAGTTGGG TAAAGCCAGT 
TGTTTAGTAG TTGATGATAA AGATAATTTT TTAAGAAGTG CGATGAAAAT GCTTTCTGTA 
AAAATAGGTA TTACTCGGTT ATTTGTTGAA GGAGGTGGTG TTTTAATTAC AGAATTGCTT 
AAAAATCAGT TGATTGATAG AATTATATGG TGTAGATCAA ATAAAATTTT TGGCAATGAT 
GCAATACCAT CTATTGGTGA TTTGGATATC TTGACACTAC AGTGTGGTTA TAATTTCAGA 
GCAGTAGATA CATTATATTT TAAGGATGAT ATTGTAGAAA TTTTAGAGCA TTGTACCGAA 
TAA 

 

Protein sequence

MIRYDKKFMS LALRIARRGL GNVFPNPAVG CIVVNHGMVV GRGYTQVGGR PHAEVIALNN 
AGHLAKGSTV YVTLEPCSHY GQTGPCALKL IDAGVKRMVI AAKDPDVRVS GNGIELLRNA 
GIDVKCGVMY EEARELNIGF FYSKIKNRPF ITVKLASTLD GKIALKDGNS RWITNELTRN 
WVHKQRSMYD AIMVGSNTIV QDNPMLNTRL PGLECYSPVR IVIDRFGKVC DYHNIIKTSD 
VIPTYILTND VPQTKLGKAS CLVVDDKDNF LRSAMKMLSV KIGITRLFVE GGGVLITELL 
KNQLIDRIIW CRSNKIFGND AIPSIGDLDI LTLQCGYNFR AVDTLYFKDD IVEILEHCTE