Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH_0050 |
Symbol | dapF |
ID | 3926983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ehrlichia chaffeensis str. Arkansas |
Kingdom | Bacteria |
Replicon accession | NC_007799 |
Strand | - |
Start bp | 45664 |
End bp | 46467 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 637901174 |
Product | diaminopimelate epimerase |
Protein accession | YP_506881 |
Protein GI | 88658257 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.184283 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAGATT TTATAAAAAT GCATGGAACC TCTAATGATT TTGTAATCAT AGATTGTAGG AAAAAATCTT ATAGTAACAT TAACTATAAA GCAATTGCCA ATAGAAAAAC AGGTATTGGT TGTGACCAAA TCATTATTAT AACAGAATCT GAAAAAGCAG ATTGCTTTAT GCACATATAT AATGCAGATG GAAGCAAAGT TGAAATGTGC GGAAATGCTG CAAGATGTGT TGGATACTTA TTAAGCAATG AAAAACAAGA TAATAATATA ACAATTGAAC TATCTGACCG TATATTATCA TGTTTAAGGA CATCGGAAAA TAGAGTACAA GTCAACATAG GAGTAGCAAA ATTCCATTGG ACAGATATAC CTACATCTCA AGAATGTGAT ACTTTGCACT TACCTATAGA ATTAGAAATG TTAAGCGATC CTGTAGGAAT AAATGTAGGG AATCCTCATG CAATATTTTT TGTTGATTCC ATAGAGACAA TTCCACTAGA TAAACTAGGA CCAAAACTAG AAAATCATCA CCTTTTCCCC AAAAGGGCAA ACATTAGTAT TGCTGAAATT GTATCCAGAG ATAAAATAAA ACTTAGGGTC TGGGAACGCG GAACTGGGGA GACAGCCTCA TGTGGCAGCG GAGCATGTGC AGCATTAGTC GCAGCAATAA GACGTCAATA CACCAACAAG ACAGCAGTCG TATGTTTACA AGGTGGTGAT TTATTAATAT CATACCAACA TGATAACACT ATTTTAATGG AAGGGATGGT ATCATATATA TTCAATGGCA TTTATCGTGT CTAA
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Protein sequence | MIDFIKMHGT SNDFVIIDCR KKSYSNINYK AIANRKTGIG CDQIIIITES EKADCFMHIY NADGSKVEMC GNAARCVGYL LSNEKQDNNI TIELSDRILS CLRTSENRVQ VNIGVAKFHW TDIPTSQECD TLHLPIELEM LSDPVGINVG NPHAIFFVDS IETIPLDKLG PKLENHHLFP KRANISIAEI VSRDKIKLRV WERGTGETAS CGSGACAALV AAIRRQYTNK TAVVCLQGGD LLISYQHDNT ILMEGMVSYI FNGIYRV
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