| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH_0044 |
|---|
| Symbol | virB8-1 |
|---|
| ID | 3927153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ehrlichia chaffeensis str. Arkansas |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007799 |
|---|
| Strand | - |
|---|
| Start bp | 41465 |
|---|
| End bp | 42178 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 637901168 |
|---|
| Product | type IV secretion system protein VirB8 |
|---|
| Protein accession | YP_506876 |
|---|
| Protein GI | 88657917 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.677049 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACGTA TGTTTAATAA ATTCAGAAAG AAGAATAATA AAAATGATAA TAACAAACTA
TCAAACGCAA ATTTAGAAAC AACATACAGT TGGCACGTCA GTCGTTATAA CTCAGTTGTT
ATACAAAGAA ATATGCTACT GTTTTTTACC ATGCTAGCAT TAAGCGCAGT AGGAATCAGC
GTTTTCGTCA TTTTTAATAT AAGCAAAAAC AGAACTATTG AACCATTTGT AGTAGAAATA
GAGAAAAAAT CTGGAATCAC AACTTTAGTA AACCCTGTAT CAGTCAAACA ATACTCAGCA
GACGAAGTTT TAAATAATCA TTTTATAATA GAATATGTAA GATCTAGAGA GCTTTTTGAC
CCTAATAATT TTCAATATAA CTATTACACA AAAGTTCGTC TATTTTCTAA CCAAACAACA
TACAGTGAGT TCCGTAACTG GATAAGGCTA AGTAATCCTG CAAGTCCTTT AAACTTATAT
GCAAATGTAA CATCAGGATA TCTTAAAATC AGATCTTTAC AGCATTTGCG TCCAGGAAGT
GTACAAATCA GGTTCTCCTT AGAATTTAAC CATCCAAGTG GCATAATAAA AAAAGATAGA
ATAGCTACAT TATCATTTCA ATACGTAACT CTTGAAATGA ATGAACAAGA ACGGCAAATT
AATCCTTTAG GATTCCAGAT AACTTACTAT AGGGCAGATG ATGAATTTCT ATAA
|
|---|
| Protein sequence | MIRMFNKFRK KNNKNDNNKL SNANLETTYS WHVSRYNSVV IQRNMLLFFT MLALSAVGIS
VFVIFNISKN RTIEPFVVEI EKKSGITTLV NPVSVKQYSA DEVLNNHFII EYVRSRELFD
PNNFQYNYYT KVRLFSNQTT YSEFRNWIRL SNPASPLNLY ANVTSGYLKI RSLQHLRPGS
VQIRFSLEFN HPSGIIKKDR IATLSFQYVT LEMNEQERQI NPLGFQITYY RADDEFL
|
|---|
| |