| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0953 |
|---|
| Symbol | pdhC |
|---|
| ID | 3931514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | + |
|---|
| Start bp | 837687 |
|---|
| End bp | 838898 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637901107 |
|---|
| Product | pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase |
|---|
| Protein accession | YP_506817 |
|---|
| Protein GI | 88608175 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTAA AGATACTAAT GCCGGCACTA TCACCAACAA TGAAAGAGGG TACGCTCGCA
AAATGGCTAG TGAGTGAGGG TGAAAAGATA GAAGCAGGAC AAGTAATAGC GGAGATAGAA
ACTGATAAAG CCACGATGGA ATTTGAAGCT GTCGACGAGG GAGTACTAGG AAAAATACTC
ATCCCGGCAA AAACCGCAGG CGTAAAGGTA AATCAGCCAA TAGCCGTTCT GCTCGATGAT
GGTGAAGGCG AAAAAGAACT AAAGAAGTTT CTATCCACGA TAGACAAACC CACTGTCACG
GACAATAAAG CAGAAACATC AGATGGAGAT AAAATCAAAA ATAATCCCTC CAGTCTGCCA
GCTGATAAGC AACAGGGCAG GGTAATTGCA ACTCCGCTTG CAAGAAAGAT TGCGTCCATC
AATGGTATTG ACTTATCACT TATCGGAAGT GGAAGTGGCC CTGACGGTAG GATCGTAAAA
AATGACTTGC TTAAGTTGCT TGATGACGCA CCACAAGTTC AAATGCACGG ACATTGCACC
GAGACCAGTA TACCAATTTC TCCAATGCGG CGTGTAATAG CGCAAAGACT CGTAGAATCG
AAGCAAAATG TTCCTCATTT TTACCTTTCC GTGACTTGCT ATTTGCAGCA TCTGCTATCG
GCCAAAAAAA AATTCTACGA CTGTTTGGAA ACAAAAGTCA CAGTCAATGA TTTCGTTATA
AAGGCATGCG CTTTTGCTTT GGATAAGAAT CCAGCAATGA ATGTGTCGTG GGAAGGAGAA
TTTATTAGGC AGAATCAAAC TATTGATATA TCAGTTGCCG TTGCGATCCC GGACGGACTA
ATTACACCTA TAGTCTTCTC AGCAGATAAA CTATCGCTTT CATCTATTTC AGATGAGGTT
CGGGAATTAG TGGATAAAGC AAAAGCAGGC AGACTTCAAC CACGGGAATT CCAGGGCGGA
TCTTTTACTG TTTCCAATCT CGGTATGTAT GGCATAGATG AATTTACAGC GATAATTAAT
CCACCTCAGG CAGCAATCCT TGCCGTAGGT GCAGCGCGAA AAGTTCCAAC TGTTTCTGCG
GATGCGGTCG TAGTTAGCGA CGTCGTGACG CTGACATTAT CTTGTGACCA TAGGGTTATC
GATGGAGCAT TGGCAGCGAG GTTTATGCAA TCGCTTAAAA AGGCAATAGA AGACCCTGTA
ATAATGTTGT GA
|
|---|
| Protein sequence | MPVKILMPAL SPTMKEGTLA KWLVSEGEKI EAGQVIAEIE TDKATMEFEA VDEGVLGKIL
IPAKTAGVKV NQPIAVLLDD GEGEKELKKF LSTIDKPTVT DNKAETSDGD KIKNNPSSLP
ADKQQGRVIA TPLARKIASI NGIDLSLIGS GSGPDGRIVK NDLLKLLDDA PQVQMHGHCT
ETSIPISPMR RVIAQRLVES KQNVPHFYLS VTCYLQHLLS AKKKFYDCLE TKVTVNDFVI
KACAFALDKN PAMNVSWEGE FIRQNQTIDI SVAVAIPDGL ITPIVFSADK LSLSSISDEV
RELVDKAKAG RLQPREFQGG SFTVSNLGMY GIDEFTAIIN PPQAAILAVG AARKVPTVSA
DAVVVSDVVT LTLSCDHRVI DGALAARFMQ SLKKAIEDPV IML
|
|---|
| |