| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0862 |
|---|
| Symbol | virB6 |
|---|
| ID | 3931420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | - |
|---|
| Start bp | 768308 |
|---|
| End bp | 770929 |
|---|
| Gene Length | 2622 bp |
|---|
| Protein Length | 873 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637901017 |
|---|
| Product | type IV secretion system protein VirB6 |
|---|
| Protein accession | YP_506729 |
|---|
| Protein GI | 88607976 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTTT TTCTCAGAGG AATACTTTTA CTCTTAGCAC TCAACCTTTT AGACAATAAT
ATACTGCTTC TTAAGAGCGG GTTCTTCTTT TCTCACGCGT ATGCAGAAGA GGTTGTGCTA
CCCAAAGTAA TGCCGGGTGA AGCATCTTAT CCTGAATGTG GAACCGACGT AGCTTTTGCA
CTCATTGGTC TGATTGCTGG TATTGTAGCT GGAATAATGA TTATTGTTGG CAGCGGTGGA
ATTATAGTTG CTGTTGGTCT TGGATTGATA GCTGCTGCGG TAGTTTCAGC GATGCAACTG
GTAGGCTGTC TTTGGTCATT TGTTAGAAAC CCGGTTCTTA GAACGCGTAC TGGATACTAT
AAATACTGCC AGGATGAAGG TGCGGGAGCT GAGGTCTGCT CCGATGAGAA AATGGTCTAT
TGCGAGAAGA AGGAGAGCAA TGAAATCAAT AGTAATGCGG GGGGTTGCAC GTATGCTTGG
CCACGCAACA GAGCAGAGAA CGGAAAATAC ATTGAAATAT GTTACAGAGA ACCTTTTGAT
TGGGGTTATA TCTCCAGAGC AGGGCAGGAG ACTCAATTGG ATAGCAGGGA AAGTAGTTTC
ACTGCAATTA ATCTTGGTGT GTTGGGTGGT GAGAACAAAA TCCAAAGTTT GGATACCCTT
ATAGACATGA AAAGAAAGGT AAGTGTGCGC TCGATACAGT GTGTGACACT GAAAAACATG
GAAAGTAGGA GAATAGGTCC TTATGTTTTT TCTGCTGAGT ACGATGGATC CAAGCTTTGC
GGCTATGTCA CGTTTTCTAG AAGGGCGAAA GTTGGCTGTC ATTTGAGAGA TCCCGCCGAC
CCTTCCCCTA TGTGTATCAA ATCGAAGCCG ATTTATGATC CTGACGATCT TTCCAGGGTG
TTAAGTTACG ATAATTCAGG TTGTTTCAGT TGTTACATAA GTAGCGCATG TTACGGTGTG
ACAGGCTTGA TTGCGAAGGC CCAGTTCCCG ATGACATCTT TGGTGGTCCA GTGTATTAGG
GAGTCATTGA GAAACATTTT GGTTTCGGAC TGTAAAGAAA GTGAGGGTTT CTTAGTTATT
GCACAGAAAA AGTTAAAGGC TGCCGTAGAG GCTGTATTAG TTCTCGCGGT TCTGCTATTT
GGCTTCAAAC TTCTTAGTGG TGGTGTAAGC GGTCTACAAG AATGGACAAT GTTTGTCCTT
AAAATTGCTG CAATTGCTTA TTTCACGATA GGTGATGGAA TGATCGTCTA CTATGATAGA
TTGCTCACGC TCTCTACCGG TCTAGCGGAT ATCGTCTACA GCGGAGGAGG AAAAAAAGAT
GTGTGTGACT TCGACTCATC CGAATATAAT GAACTTGTGG TTACAAAGCC CCTATCTGCC
GAAGAAAGGG GGTGCTTTGA GGCTTTTGTC AAGTCAGGGC ATAAAAGAGA CTTTGCTGAA
TTGAAGAAGT TTATTGATTC AGGTGTTTTA AGTTGCTCCT CACTGAAACT AGGACAAGGT
GGTAACTTAC CTATATTCTC AAAGTTAGAA TTGAAAAATC TCTCCTACAT GACTCTTTGG
GATAGGTTAG ATTGTAGGGT GGCTTTCTAC TTGGGTAGTG CTCTTGGTAA TCCGACTGTT
GCAGGTGGTG GTGTAGCGAC TGTCATAACG GCTGGTGCGA TAAGTGCGCT TGGCGCAGGG
ATATATATGG TACCCGTATT GATCTTGGCA TTCTTTTTTG CAGGACAGTT GGTAATTGCC
TTGTTGGTCC TAATGTACGT GATACTCATG TTCCTCATTA TCCTGTGGAT AGTACATCTT
TTCATACTGG CAATAATCGC GCTTACGATA CTGATACTTT TTTCTCCGAT TTTTATCCCG
ATGATTTTGT TTCAGGTAAC GAAACCTTTC TTCGAAGGCT GGTTGAAAGA AGTGATGGCT
TACTCGCTGT ATCCTATAGT TTTGTTTGGA TTTTTAGCCC TTGTTTTTTC TGTTTTTGAC
AAGCTCTTCT TTGATGATCT GACCTTCCAG CGCGTTTCTA AGTTAGATGG TGTACGGAGT
TACTACAGCT ATAAGCTTGC GAATCCAAAC CAGTGTAAAG AGAAAAATGC AGACGGAGAG
TTGAGGGATT CTTCAGTTCT TGCATGTGTA ATTCAGGAAA TGTCACTTAC ACAGAAACCG
TTACTTTTTG GTATTTATGT CACTACGATT GCGAGTGACC CTTCATCCAC TAGTGTTTTA
TGGATAAAGC TGGGCATGAT GGCTTTAATG CTATTCTTGT TTTTCCACTT CCTTGGTATT
TTAGGTGGCT TGGCTGCAGA GCTCGTTGGC AACTTCCGAG CAGATCTTTC AAGACATGTC
AGCAGTCCTC AATCCATGGC AAAAAAACTC GCTGCTATTT CACTTAATAC TTCTAAGACC
TTGGTTGAAG GAGGAAAGAA CATAGGCAAG AAACTTGGAG GAAAACGTGC GGGACCAGAG
GGCTCTGGTG ATCAAACCGT TAAAGCTAAG ACCTTGGTTG AAGGAGGAAA GAACATAGGC
AAGAAACTTG GAGGAAAACG TGCGGGACCA GAGGGCTCTG GTGATCAAAC CGTTAAAGGC
GCTGGAGAAG GTGGTGCAGG CGGAATGGGT GGTGCAGGTT AA
|
|---|
| Protein sequence | MKLFLRGILL LLALNLLDNN ILLLKSGFFF SHAYAEEVVL PKVMPGEASY PECGTDVAFA
LIGLIAGIVA GIMIIVGSGG IIVAVGLGLI AAAVVSAMQL VGCLWSFVRN PVLRTRTGYY
KYCQDEGAGA EVCSDEKMVY CEKKESNEIN SNAGGCTYAW PRNRAENGKY IEICYREPFD
WGYISRAGQE TQLDSRESSF TAINLGVLGG ENKIQSLDTL IDMKRKVSVR SIQCVTLKNM
ESRRIGPYVF SAEYDGSKLC GYVTFSRRAK VGCHLRDPAD PSPMCIKSKP IYDPDDLSRV
LSYDNSGCFS CYISSACYGV TGLIAKAQFP MTSLVVQCIR ESLRNILVSD CKESEGFLVI
AQKKLKAAVE AVLVLAVLLF GFKLLSGGVS GLQEWTMFVL KIAAIAYFTI GDGMIVYYDR
LLTLSTGLAD IVYSGGGKKD VCDFDSSEYN ELVVTKPLSA EERGCFEAFV KSGHKRDFAE
LKKFIDSGVL SCSSLKLGQG GNLPIFSKLE LKNLSYMTLW DRLDCRVAFY LGSALGNPTV
AGGGVATVIT AGAISALGAG IYMVPVLILA FFFAGQLVIA LLVLMYVILM FLIILWIVHL
FILAIIALTI LILFSPIFIP MILFQVTKPF FEGWLKEVMA YSLYPIVLFG FLALVFSVFD
KLFFDDLTFQ RVSKLDGVRS YYSYKLANPN QCKEKNADGE LRDSSVLACV IQEMSLTQKP
LLFGIYVTTI ASDPSSTSVL WIKLGMMALM LFLFFHFLGI LGGLAAELVG NFRADLSRHV
SSPQSMAKKL AAISLNTSKT LVEGGKNIGK KLGGKRAGPE GSGDQTVKAK TLVEGGKNIG
KKLGGKRAGP EGSGDQTVKG AGEGGAGGMG GAG
|
|---|
| |