| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0842 |
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| Symbol | |
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| ID | 3931516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | - |
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| Start bp | 743623 |
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| End bp | 746190 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637900997 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_506710 |
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| Protein GI | 88608351 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00254207 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTCGAA GGGAAGATTA TGAACATCTG ACCGAGTCTG AGCTCGGTTC TCGCCCGCCT
AAGGGTACAT TGTTGTACAT GGTTATTTCT GGTGTGGCAC TGGCTTGGGC GTTTTTTCAG
CTTTGGGTCG CATCTCCTCT GCAGTTTTAT CTGGCGAATT ATGTTGGGTC GACTGTATTC
ATTTTCAATG ATTTTCAAGT GCGTGCTATA CATCTTGCAT TTGGACTTTT CTTGGCTTTG
TCGATGTTTC CAGCCTTTTC AACCTCGGAG AAAAGATATA TTCCTGTTGC GGACTGGATA
CTGAGTCTTC TAGGTGTATG CGCATGCTTG TATCTAGTAA TCTTTTACGA GCAAATTGCG
TTGAGACTTG GTATTCCGAC AATAGTTGAT CTGCTGATTG CTGCGTGTGG GATGTGCGTT
CTCCTTGAGG CTGCACGTAG GACAGTAGGC TTTGCGGTTG TAGCTGTTGT GTTGGTGTTT
CTTTTTTACT CCAGATTTGG TGAAGTTATG CCAGATGTTA TTGCTCATAA GAACTACATG
TTCTCAGCGA TTGCTTCACA GCAGTGGTTT TCTACCGAGG GTGTTTTTGG GACAGCTATT
TCCGTATCTG CAGACTTTGT CTTCTTATAT GTTCTTTTTG GGGGTCTATT GGAAAAAACA
GGTACAGGGA ATTTCTTTAT CGAACTTTCG TTTCTACTTT TAAACAGGTT TAGGGGCGGA
CCTGCAAAGG CTGCTGTAGT TTCCTCTGGA CTTATGGGAA TGATTTCCGG TTCTTCAATT
GCGAATACTA TTACTGTTGG TTCATTGACC ATTCCTATGA TGAAAAAAAT GGGCTTCAGC
GCTGAAAAAG CTGCTGCTGT CGAAGTTTCT GCTGGAATAA ATGGTCAGAT TATGCCTCCG
GTAATGGGAG CTGCTGCGTT TTTAATGGCA GAGTATCTTT CAATTCCTTA TATCGAAGTT
GTAAAGCATG CTTTTCTACC GGCAATTTTA ACGTATATAG CGCTTCTATA TATAGTCCAC
GTTGAAGCCT GTAAGCTTGG TATCGCACCT CAAATCGTTT CGGATGCCAA GAATATGAAG
TTTTCTGACA TGATTTGGCG TTTGCTGCTT ATTTGTGCAT CCACGGCAGT TCTTATTTCA
GGTATCTATC TCCTTATGGA GGGATTTTTA CAGTTCTCGG GGTTGAAGAG AATCACTGGT
TCGCATGTTA TGCCCGTTAT GGGGGGATTA TGTGGGTTAG TATATATTTT GCTCCTGTGG
TACCAGCACA CACTGAGCAA AGCGACGGAT GTTGATAAAT CCAGCGTGGC CTTCAAGCTG
AAAACGGGCT TACATCACTT TTTGCCCTTA ATTATTTTGG TGTGGTGTCT TCTTGTGGAA
CGAATGTCTC CAGCGCTCTC TGCTTACTGG ACGATACTTT TTCTATTTTT TGAGCTGCTT
ACAAAAGAAG TCGTTCTAAA TGCTCTTGAG CGTAAGCAAG GGTTTTACTT AGCAGTGCGT
GGCGGTTTCA TTAACTGTGT TAATGCAATG ATAATGAGTT CAAAGAACAT GACAGTAGTA
GCCGTTGCAA CTGCAGCAGC AGGAATCATT GTTGGTTCGG TTTCTTTGAC AGGCATAGGT
TTGAAAATTG GTGGTGTTCT CGACATTGTA TCTAACGGAA ACCTTCTATT AACCCTGTTC
CTTACAGCAG TCATGTGTAT AATCCTAGGA ATGGGAATGC CTACCACAGC ATGCTATATC
ATTGTTTCAA CTCTGATGGT CCCTGCATTA ATGCATGTGA CAGATAAGAG TGGGATAGTA
CTTCCACTAT TTTCCGTTCA CTTGTTTGTT TTCTATTTTG GTCTCATGGC TGATGTTACA
CCCCCGGTTG GTTTAGCTTC GTATGCAGCT GCAGCTATAG CGGGTGGTAA CGCAATCATG
ACGGGAGTGC AGGCGTTTTT ATACAACATT AGAACCATGT TACTTCCCTT CTTGTTTGTT
CTGGATCCTC AGATCTTGGG ATTCAATCTT TCGAGTCCTC TAGATTTGTT TCAGGTTGTT
GTTTTCTCTA TACTGGGAAT AATATGTGTA ACAGCGGGGT CACAGGGTTA CTTCCTTATT
AGGAGTAAGT TTTACGAGTC AGTACTGCTT TTCCTGATAG GAGTTGCTTT TTTAGCACCT
TCAATTTTCA TCAATCTTGT TACACGGGAA TACCTGCCCC TTGAAATGGA TAAGCATGTC
TTGGAAAGAT TTAATGACTC TAAAAGGCTC AGAGTCGTGC TGCAGGAACG AAGTTTTTTT
GGCAATCCGG AAATAAGAAA GATCACAATA CAGAACAGTA CTGCTGGCAC AGTAGGTCAA
CAGCTTCGTT CTTGTGGAAT AGTAGCAGCG TATGATGGAG ACTGCGTGTT GAACATTTTA
TCAGTCGATT ATGGTGCGAC GAGTCAGTGT GCAAAGTTCG ATACCTCTAT GAAGATTATT
CGAATTATGA TATCCCAGCA ACAGATGCCA AAGTGGGTCG TGTATGCTAC ATCTTTTTTA
CTATTTTCCT GTATCTTCCT GGGCCAAAGG AAGCGTAAAA TGTCCTGA
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| Protein sequence | MVRREDYEHL TESELGSRPP KGTLLYMVIS GVALAWAFFQ LWVASPLQFY LANYVGSTVF
IFNDFQVRAI HLAFGLFLAL SMFPAFSTSE KRYIPVADWI LSLLGVCACL YLVIFYEQIA
LRLGIPTIVD LLIAACGMCV LLEAARRTVG FAVVAVVLVF LFYSRFGEVM PDVIAHKNYM
FSAIASQQWF STEGVFGTAI SVSADFVFLY VLFGGLLEKT GTGNFFIELS FLLLNRFRGG
PAKAAVVSSG LMGMISGSSI ANTITVGSLT IPMMKKMGFS AEKAAAVEVS AGINGQIMPP
VMGAAAFLMA EYLSIPYIEV VKHAFLPAIL TYIALLYIVH VEACKLGIAP QIVSDAKNMK
FSDMIWRLLL ICASTAVLIS GIYLLMEGFL QFSGLKRITG SHVMPVMGGL CGLVYILLLW
YQHTLSKATD VDKSSVAFKL KTGLHHFLPL IILVWCLLVE RMSPALSAYW TILFLFFELL
TKEVVLNALE RKQGFYLAVR GGFINCVNAM IMSSKNMTVV AVATAAAGII VGSVSLTGIG
LKIGGVLDIV SNGNLLLTLF LTAVMCIILG MGMPTTACYI IVSTLMVPAL MHVTDKSGIV
LPLFSVHLFV FYFGLMADVT PPVGLASYAA AAIAGGNAIM TGVQAFLYNI RTMLLPFLFV
LDPQILGFNL SSPLDLFQVV VFSILGIICV TAGSQGYFLI RSKFYESVLL FLIGVAFLAP
SIFINLVTRE YLPLEMDKHV LERFNDSKRL RVVLQERSFF GNPEIRKITI QNSTAGTVGQ
QLRSCGIVAA YDGDCVLNIL SVDYGATSQC AKFDTSMKII RIMISQQQMP KWVVYATSFL
LFSCIFLGQR KRKMS
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