| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0678 |
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| Symbol | rpoB |
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| ID | 3931355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | - |
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| Start bp | 598275 |
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| End bp | 602351 |
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| Gene Length | 4077 bp |
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| Protein Length | 1358 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637900834 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_506556 |
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| Protein GI | 88608380 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.299005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAT TTCACAGGTT ATACTTCGAT GAGCTGCTTT TTGACTTTCC TGATCTGGTG
AAAGTCCAAA AGGATTCTTA TGCTTCGTTT GTAGGTGGAG GTGATACTGT ATTTTCAATC
AGCGATATTT TTGCATCCGT TTTTCCGGTG AATGATGGAT ATGGTAGGGC TTCCCTTGAG
TTTGTGAGCT GCAGGATGGG TGAGCCTAAG CATGACGAAT ATGGCTGTGT TGAAAGAGGT
ATTACGTACT CGGCGCCGCT CAGGGCAATA CTTAGGCTAG TTGTTTTTGG TGATGAGACA
TCTGGCGAAG GTAGTGAGGG GGTGTCAACT GAACCAGCGG TAAAGGATGT ACGAGAACAG
GAGATATACA TGGGTGACAT ACCCATTATG TCTAAGAACG GGACGTTCAT AATAAATGGT
GTGGAAAGGG TTGTCGTATC TCAGATGCAT CGTGCACCTG GGGTGTTTTT CGATAATGAC
AAAGCTAGGT CAATCTCCGG CAAGCTCAAT TATATTGCGC GTATCATACC TTATAGGGGT
TCTTGGTTGG ACTTTGAGTT TGATGCTAAG GACGTATTGT ATTTTCGAAT AGATAAAAAG
AGAAAACTTC CAGTCACTTT TTTGCTTAGG GCTCTGGGGT TGTCGAATAA GGATATTTTT
GCTCAGTTTT GTGAGGTCTC GGAGTGTCGC TTAACGAAAG ATGGTAAGTG GACTGTTTGC
TTTGTTCCGG AAAAGTTTAA GGGGGTTCGT CTTCAGTATG ATCTTATCAA TGCGGAGACA
GGTGAGTTAG TTTTGGCAAA GGGCAACAGG ATTTCCATAG TATTGGCGCG AAATCTATAT
GCGAAAGGGT TACGTTATTG CTACATGGAC TTAGAAGTCA TGAAGGACAT GTACCTTGCT
GATGATCTTG TCTCGACTAA AGGAGAAGTT CTTCTTCCAC ATGGTACGAA GTTGACCAAG
GAGCATGTTG CAAAGTTGGA ATTTCTTGAT GTGGATTCTA TTAAGTTGGT TGAACTGAAG
GGTAATTATG TATTCAGTAC TGTTTTGCAG TACGATTGCT CTTATGAAGA AGCAATGCTC
TCGATATATA GAGTTGTTCG GCCAGGTGAG ATTCCTTCTG TTGAGTCTGC AGAGAAGCTG
TTTGAGTCGC TCTTTTTTTC TCCTGAGAGG TACGATCTCC TGAACGTCGG TAGGATCAGG
CTAAATGCCA AGTTTAATCT AAGTCATGAT GAGAGTCTGA CTGTTTTGAC TAAGGAGGAC
ATTTTTTGCA CGGTAAAGGA GTTGGCCCTT TTACAAAGAG AAGTTGGGGA CGTCGATGAC
ATAGATCATC TTGGCAATAG GCGGGTTAGG TCTGTTGGGG AGTTTATGGA TAATCAGTTC
CGCATCGGGC TTGTGAGGAT GGCCAAGGTT ATTGTCGAAA ATATGGCGAC TGCCGACTTT
GATACGGTGA TGCCGTGTGA AATGATAAAT TCTAAGATTC TTGGGGCTGT CATTCGTGAA
TTTTTCATGT CTTCGGCACT TTCGCAGTTT ATGGATCAGA CTAACCCACT CTCGGAAATT
ACGCATAAAC GCCGTATATC AGCTTTAGGT CCTGGGGGAT TGAATAGAGG TAGGGCGGGA
TTCGAGGTGC GAGATGTGCA TACCACGCAT TACGGTAGGA TCTGTGCAAC GGAGACCCCG
GAAGGTGCGA CTATTGGGCT GATAAATAGT CTTGCTATAT ATGCAAAGAT TAATAAGTAT
GGCTTTATAG AGACCCCCTA CCGCTATGTG CGTGATGGCC GTGTTACCGA CGAAGTCACA
TATCTTTCTG CGATCGATGA AATAAAGGCA AATATTTGTC AAGCTAGTGT TCGTGTCGAT
GAAGAAGGCT ATATAGTCGA CGATTTGGTG TACTGTCGTA GGAATTATGA GAATGTTTTT
ATTCCGCGTA GTGAGGTTCA GTTTGCGGAT GTATCGGCTA AGCAAATAGT CTCGGTTGCT
GCCTCTTTAA TTCCTTTTCT GGAAAATGAT GATGCAAATA GAGCTCTCAT GGGTTCCAAC
ATGCAAAGAC AAGCTGTACC ACTTATCATG CCTGAGGCAC CATTGGTTGG GACTGGGATG
GAAGGCTATG TAGCGCGTGG TTCTGGTGCC GTAATAGTTG CCAAACGTGC AGGTGTTGTG
CAGTATATAG ATGCCAGGAA TATCGTTGTT GCGTCGGAGT CGAAGGACGA TTTCTGGATT
GATTCTTATA CGTTGTGTAA ATTCAGAAAG TCGAATCACA ATACATGTAT ACATCAGCGT
TGTGTTGTCC ATCAGGGACA GCGTGTTAAA AAAGGTGATA TTCTTGCTGA TGGACCAGCG
ATTCAAAAGG GTGAACTAGC TCTTGGAAGG AATTTGGTGG TGGCTTTTCT CTCGTGGCGT
GGCTACAACT TTGAGGATTC CGTTGTCATT TCAAGTAATG TTGTCCGTGA TGATCTTTTC
ACTTCAGTGC ATTTAGAAGG TTTTGAATGT GTTGTTCGCG ATACAAGGTT AGGTCCTGAG
GAAATAACAA GGGATGTTTC TGGTGTGGCA GAAGAGTTTT TACACTGTCT TGATGAGTTT
GGCATAGCAT GTGTTGGGGC AAACGTCGAG GCTGGAGATG TTCTGGTAGG AAAGGTGACG
CCTAAAAGTA GTTCACCTGT GACACCCGAA GAAAAGTTGC TTCGTGCTAT ATTTGGAGAG
AAAGCGATTG ATGTGAAAGA TTCGTCTCTG TACTTACCAC CTGGTGTATC TGGTTGTGTA
GTGGATGTAA AAGTACTGCA GCGTCGGGGT ATAGAAAAGG TTGGTAGGGC ATTGTTAATA
GAGAAACAGG CGATCGATGC CGAAAAAACG AGGCGTGACC ATGAGCTTGC GGTGTTGACG
AACTATATTT ACTCGCTCCT GAAGGAGATG CTGGTTGGTA AGGTTGCTCT TAGTACTTTA
GCACCAATCT CAAAGGGTGA TTTGATTACA GAAGAGGCTC TTGAAAAGAT AGATAGGGAG
AATTGGTGGA AGATTAGTGT TGATGGAATC TCTTCGATAA AGCTTTTGAG GCAAAGGTTT
GTTGATCGCT TTGACGAAAT TAACAAGACC TATGAGGAGA ATTTCGAAAA AATTCGAGGT
GATGATGATT TGGCGCAGGG TGTCCTGATG GTGGTAAAGG TTTTTGTCGC TGTGAAGCAT
ACCCTTCAAC CAGGTGATAA GATGTCTGGT AGGCATGGAA ATAAGGGTGT TATTTCCAGG
ATAGTCCCAG CTGAGGATAT GCCTTACTTA GCTGATGGTA CGCCTGTGGA TATCATACTT
AACCCTTTGG GTGTGCCTTC AAGAATGAAT GTGGGTCAAA TTCTCGAGAC ACATCTTGGT
TGGGCTGCAT ACAATTTGGG TAAGAAAATC TCGAAATTGC TTGATGAAGG TAACTACTCT
GAGGTGAAGT CATTGGTTCT TGAGATTTAC AAGAACGATA GGAAAATGAT GGCAAGACTT
AATGAGATGA CGGATGCTGA AATAGTCGAG TATTCGCGTT CTTTGAGAGG CGGAGTTCCT
GTTGCGGCTT CGGTTTTTGA AGGTCCTAAA ACAGACGAGA TAGAAAGGCT GTTAGTTCTC
GCAGGAAAAG ATCCTTCGGG TCAGGAAGTC TTGTATGATG GTGTAACTGG AGAGAAGTTT
GATAGGAAGG TCACTGTTGG GTGTAAGTAT ATGCTGAAGT TACATCACTT AGTGAATGAT
AAGATTCATG CGCGTTCTAT CGGTTCCTAC AGTTTGATAA CGCAGCAACC ACTCGGAGGA
AAATCACATT TTGGTGGACA GCGTTTTGGT GAGATGGAAT GCTGGGCGTT GCAAGCTTAT
GGTGCAACAT TTGCATTACA GGAGATGCTT ACTATCAAAT CTGACGATGT GGTAGGTCGC
GTCAATGTAT ATGATTCGAT AGTGCGTGGT GATAATGATT TTTATTATGG TGTTCCCGAG
TCCTTTAATG TAATGATGAA TGAGTTAAGG GCCTTATGTT TGAACGTGGA GTTTTGTTCC
GATTTGGAAA AAAAGAAAGA TTTTGGTGAT CTTGCATTAG CAGCATCGGG ACAATAG
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| Protein sequence | MSEFHRLYFD ELLFDFPDLV KVQKDSYASF VGGGDTVFSI SDIFASVFPV NDGYGRASLE
FVSCRMGEPK HDEYGCVERG ITYSAPLRAI LRLVVFGDET SGEGSEGVST EPAVKDVREQ
EIYMGDIPIM SKNGTFIING VERVVVSQMH RAPGVFFDND KARSISGKLN YIARIIPYRG
SWLDFEFDAK DVLYFRIDKK RKLPVTFLLR ALGLSNKDIF AQFCEVSECR LTKDGKWTVC
FVPEKFKGVR LQYDLINAET GELVLAKGNR ISIVLARNLY AKGLRYCYMD LEVMKDMYLA
DDLVSTKGEV LLPHGTKLTK EHVAKLEFLD VDSIKLVELK GNYVFSTVLQ YDCSYEEAML
SIYRVVRPGE IPSVESAEKL FESLFFSPER YDLLNVGRIR LNAKFNLSHD ESLTVLTKED
IFCTVKELAL LQREVGDVDD IDHLGNRRVR SVGEFMDNQF RIGLVRMAKV IVENMATADF
DTVMPCEMIN SKILGAVIRE FFMSSALSQF MDQTNPLSEI THKRRISALG PGGLNRGRAG
FEVRDVHTTH YGRICATETP EGATIGLINS LAIYAKINKY GFIETPYRYV RDGRVTDEVT
YLSAIDEIKA NICQASVRVD EEGYIVDDLV YCRRNYENVF IPRSEVQFAD VSAKQIVSVA
ASLIPFLEND DANRALMGSN MQRQAVPLIM PEAPLVGTGM EGYVARGSGA VIVAKRAGVV
QYIDARNIVV ASESKDDFWI DSYTLCKFRK SNHNTCIHQR CVVHQGQRVK KGDILADGPA
IQKGELALGR NLVVAFLSWR GYNFEDSVVI SSNVVRDDLF TSVHLEGFEC VVRDTRLGPE
EITRDVSGVA EEFLHCLDEF GIACVGANVE AGDVLVGKVT PKSSSPVTPE EKLLRAIFGE
KAIDVKDSSL YLPPGVSGCV VDVKVLQRRG IEKVGRALLI EKQAIDAEKT RRDHELAVLT
NYIYSLLKEM LVGKVALSTL APISKGDLIT EEALEKIDRE NWWKISVDGI SSIKLLRQRF
VDRFDEINKT YEENFEKIRG DDDLAQGVLM VVKVFVAVKH TLQPGDKMSG RHGNKGVISR
IVPAEDMPYL ADGTPVDIIL NPLGVPSRMN VGQILETHLG WAAYNLGKKI SKLLDEGNYS
EVKSLVLEIY KNDRKMMARL NEMTDAEIVE YSRSLRGGVP VAASVFEGPK TDEIERLLVL
AGKDPSGQEV LYDGVTGEKF DRKVTVGCKY MLKLHHLVND KIHARSIGSY SLITQQPLGG
KSHFGGQRFG EMECWALQAY GATFALQEML TIKSDDVVGR VNVYDSIVRG DNDFYYGVPE
SFNVMMNELR ALCLNVEFCS DLEKKKDFGD LALAASGQ
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