| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0677 |
|---|
| Symbol | rpoC |
|---|
| ID | 3931848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | - |
|---|
| Start bp | 594093 |
|---|
| End bp | 598220 |
|---|
| Gene Length | 4128 bp |
|---|
| Protein Length | 1375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637900833 |
|---|
| Product | DNA-directed RNA polymerase, beta' subunit |
|---|
| Protein accession | YP_506555 |
|---|
| Protein GI | 88608346 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.347752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGATT TTAGGAGTTT TCGCCAGAAT GGGGGCAGCT CGGTTGATTT TGATGGTATC
AAGATTTCCC TTGCGAGTGC TGATAAGATA CGGTCTCTTT CTTATGGGGA GGTCACTAAG
CCCGAGACTA TCAATTACAG GACATTCAAG CCAGAAAAAA ATGGTCTTTT CTGCGCAAAA
ATTTTTGGTC CTACAAAGAG TTACGAGTGT CTTTGTGGGA AATATAAAAA GATTAAGTAC
AGTGGGGTAA TTTGCGAGAG GTGTGGTGTA GAGGTTACTT CCTCAAGAGT ACGCCGTGAG
CGTATGGGGC ATATAGAGCT GGCTAGTCCT GTTGCACATA TATGGTTTTT AAAATCTCTT
CCATCGAAGA TTTGCATTTT GCTGGACTTG ACGCTTAAAA ATGTGGAGAA AGTGCTCTAC
TTTGAGTTGT ATATAGTAAT CGATCCGGGT GTTACTACAT TTACTAAAAA CGAGCTCATC
ACTGATGAAG CCTATATGAA TGCAGTTCGT GAATACGGTC CCGACTCGTT TACTGCGATG
ATAGGTGCCG AGGCTATTAG ACATATGCTT GCTTCACTGG ATCTGGAAAA GATGGCAGTG
AAATTACGCT CTCAGGCAGC TGCAACGAAT TCTGAAGTAA AGAAAAAAAA GATCATTAAG
ACGCTCCGTC TAGTAGAACA ATTTCTTGGA TCAGACAGTA GGCCGGTTGA TATGATTTTA
GATGTCATAC CAGTAATGCC ACCTGATCTT AGGCCGCTTG TTATGTTGGA TGGTGGAAGG
TTTGCGACCT CTGATTTGAA TGCGTTGTAC AGATCAGTGA TCAACCGGAA CAATAGATTG
AAGAGTCTGA TCTATCTGAA AGCGCCCAAT ATTATCATAA ATAACGAAAG ACGGATGTTA
CAGGAAGCTG TAGATGCACT TTTCGATAAT GGGCGTCGTG CAAAAGTTAT TAAGGGTAGT
AACAAGCGAC CTTACAAATC CATTAGTGAT ATGCTTAAGG GGAAACAAGG TAGGTTCCGG
CAGAATCTCC TTGGCAAACG CGTAGACTAT TCTGGGAGAT CCGTGATAGT TGTTGGTCCG
GCCCTAGAGC TTCATCAGTG TGGGCTGCCT AAAAAAATTG CGCTGGAGTT GTTCAAACCT
TTCATATATT CCAAACTGGA ACTTTATGGA ATTGCTCCGA CGATCAAGAC TGCTCGGAGG
ATGGTACAAA ATGAACAGCC AGAAGTCTGG GATGTACTTG CTAAGGTTAT TCATCAGCAC
CCTGTTTTCT TGAATAGAGC ACCTACCCTT CATAGGCTGA GTGTCCAAGC GTTCGAGCCA
GTTCTTATTG AAGGTAAAGC AATACAATTG CATCCGTTAG TTTGCACTGC ATTCAACGCT
GATTTTGACG GTGATCAGAT GTCTGTGCAC GTTCCTTTGT CTATTGAGGC ACAAGTTGAA
GCTAGGTTGC TTGTTATGTC GACGAATAAT GTCCTCAATC CAGCCAATTC ACGCCCGATT
ATTGTCCCAT CTAAGGACAT AGTTTTAGGC GTGTATTATC TTAGCCTCGA GGAGAAAGGG
GGCGTTGTCC ATCCGGTGAC TTTTTGTGCT ACATGGGAGG CTGAGCATGC TTTCGCAAAT
GGTGATATTG GGCTTCATAC TAAGATCAGA TGCGGAATTG AGCTAGAAGA TGGGGTAAAA
GTTTATACAA CGACTTTTGG TAGATTACAG TTGCTCAAAA TTCTTCCAAA GGGTGTGCCG
TTTGAAAGTA TAAACATGGT GCTTACGGTT AGAGATATAA GCAATCTTGT TGATTTGGTA
TATAAGACTT GCGGTCATGG TAAAACTGTT GAGTTTGCAG ATGGCATCAT GGAATTGGGT
TTTAGGTATG CGACGCTCTC GGGTATTTCC TTTGGGAAAG ATGATATGGT TGTACCTCCA
ACAAAATCGG AGCATGTGAG AAGAGCAAAC GAAGAGGTTA AGGAGTACGA ATTTCAGTAT
CAAGAGGGTT TGATCACCAA ACACGAAAAA TACAATAAGG TTGTTGATGC GTGGCAGAAA
TGTACGGACC TTGTCGCAAA AGACATGATG GATGGAATTT CTGGGTATGA AAGCGTTGCG
GAGATGAATT CCATCTTTAT GATGGCACAA TCTGGTGCTA GGGGTTCCGC CGCGCAGATA
AAGCAGCTTG CTGGAATGCG GGGGCTGATG GCGAAGCCAT CCGGTGAGAT TATCCCGAAT
CCAATCATAT CAAATTTAAG GGAAGGACAG GGCGTTTTAG AGTACTTTAA CTCTACGCAT
GGCGCACGTA AGGGACTTGC AGATACAGCA TTAAAAACTG CGAACTCTGG TTATCTGACT
CGTAGGCTAG TTGATGTAGC ACAGGATTCT ATTATCGTTG AAGAGGATTG CGGCTCCTCC
AATGGGTTAG TGGTTCGCGC CACCGTTGAG GGTGGTGTGG TGATTATACC GCTCAGTGAT
AGTATATTTA GTAGAGTTTC TGCGACTGAT ATTATAGACC CATCGGATGG TTCCGTGATA
GTGCGTGCAG GAGAGATGTT CGATGATAAG TCCATTGAAA GAATAGAGTC GCTTGGTATA
GATTCGGTTC GGATTCGTTC GGTTCTCACA TGCAAAAGTA AACACGGTAT ATGTCGCAAG
TGCTATGGTG CGGATCTTTC AAATAGGAAG TTGGTTGCCC TTGGTGAAGC AGTAGGTGTA
ATTGCTGCCC AGTCGGTGGG TGAACCTGGC ACACAGCTCA CAATGAGGAC ATTCCACGTT
GGTGGTGCAG CGACGCGCAG AGTGGAAAAC TCGAGTATGG TTGCGTTTTG TGGGGGTAAG
GTTAAGTTTA CGAACGCGAA CTTGATTACG GACCGTGATG GCAACTATGT TGTCTTGAGT
AGGTCGTTTG AGATCTTGCT TGTTGATTCT CTTGGTATAG AGCACTTTCA AGGTAGGGTG
CAGTATGGTG GGACCGTATA TGTCAAAGAG GGTGAAGTTG TTCCAATTGG GAAGAAGTTA
GCAGACTGGG ATTTGTACAC TGTACCTATA GTAGCAGAGG CGTCTGGCAC GGTATCTTAT
GCGGATATGA TAGAAGGTGT CTCGTACAAT GAGGTTCATG ATGAAAGTAC CGGCATTCTA
AATAGAATGG TTGTTGATTG GCGTCAAGCA GAGTCCTCTT CGGGGTTGCG TCCACGTGTT
GAGATACTCG ATGAGAGTGG TTCAGTTGCA AAGTGTCAGT ACTCTAAAGA TGCGGTTTAT
CTACTGCCGC TTGGAGCGAT ACTCAATGTG TCGAACGGCG ATGTTGTTAA AGCTGGGGAT
GTGATTGCGA AGATCACGAA AGAGTCAACA ACTACCCGTG ATATTACTGG TGGTCTGCCT
CGCGTGATCG AGCTGTTTGA AGCAAGGAAA GCTAAAGTTA ACGCAGTGAT TAGTGAAATT
GATGGCTACG TTGAATTCGC AAAGGATTAC TATAAATCAA AAAGAAAAGT TATTGTCAGG
TCGCGTGAAG ATAAGGAACG GATTTATGAG TACCTTGTAC CAAAAGGTAG ACATTTGATT
GTTAGTGAGG GGGATTTTAT TAGAAGGGGT GAGCCCCTTA TGGATGGTGA TCCAGATTTG
CACGAGATTC TCAGGGTGCT TGGTTTGGAG GCCCTTGCGG AGTATATGAT TAGCGAGATA
CAACGCGTCT ACAGGTTGCA GGGGGTTAAA ATCAATAATA AACACATAGA AGTTATAATT
CGTAAGATGC TGCAAAAAGT TGAGATCACT GATGCTGGTG ATACAACTTT CCTTATTGGG
GAGCAGATTG ATAAGTCTCG TGTAGAGCGG ATCAATGAGG TTATGGCGTC ACAGGGGTTG
AGATGCTGTT CTTATGTACC GGTCCTGTTA GGTATTACAA GGGCAAGTTT GCAGACAGAG
TCGTTTATTT CAGCAGCCTC ATTCCAGGAA ACTACTAAGG TGTTAACTGA GGCTGCGGTT
GCCGGTAAGG TTGACAGACT AAGAGGTCTG AAAGAGAATA TTATAGCAGG CAGGTTGTTA
CCTGTTGGCG CTGGGTATTT TATCGATAAA TTAAAGCGCG AGTTTACTGG CGAACGGCAA
GGTAAACAAG TGTCTGTTGG CGTAGGTGGT GATTTGACCT CCACCTAG
|
|---|
| Protein sequence | MGDFRSFRQN GGSSVDFDGI KISLASADKI RSLSYGEVTK PETINYRTFK PEKNGLFCAK
IFGPTKSYEC LCGKYKKIKY SGVICERCGV EVTSSRVRRE RMGHIELASP VAHIWFLKSL
PSKICILLDL TLKNVEKVLY FELYIVIDPG VTTFTKNELI TDEAYMNAVR EYGPDSFTAM
IGAEAIRHML ASLDLEKMAV KLRSQAAATN SEVKKKKIIK TLRLVEQFLG SDSRPVDMIL
DVIPVMPPDL RPLVMLDGGR FATSDLNALY RSVINRNNRL KSLIYLKAPN IIINNERRML
QEAVDALFDN GRRAKVIKGS NKRPYKSISD MLKGKQGRFR QNLLGKRVDY SGRSVIVVGP
ALELHQCGLP KKIALELFKP FIYSKLELYG IAPTIKTARR MVQNEQPEVW DVLAKVIHQH
PVFLNRAPTL HRLSVQAFEP VLIEGKAIQL HPLVCTAFNA DFDGDQMSVH VPLSIEAQVE
ARLLVMSTNN VLNPANSRPI IVPSKDIVLG VYYLSLEEKG GVVHPVTFCA TWEAEHAFAN
GDIGLHTKIR CGIELEDGVK VYTTTFGRLQ LLKILPKGVP FESINMVLTV RDISNLVDLV
YKTCGHGKTV EFADGIMELG FRYATLSGIS FGKDDMVVPP TKSEHVRRAN EEVKEYEFQY
QEGLITKHEK YNKVVDAWQK CTDLVAKDMM DGISGYESVA EMNSIFMMAQ SGARGSAAQI
KQLAGMRGLM AKPSGEIIPN PIISNLREGQ GVLEYFNSTH GARKGLADTA LKTANSGYLT
RRLVDVAQDS IIVEEDCGSS NGLVVRATVE GGVVIIPLSD SIFSRVSATD IIDPSDGSVI
VRAGEMFDDK SIERIESLGI DSVRIRSVLT CKSKHGICRK CYGADLSNRK LVALGEAVGV
IAAQSVGEPG TQLTMRTFHV GGAATRRVEN SSMVAFCGGK VKFTNANLIT DRDGNYVVLS
RSFEILLVDS LGIEHFQGRV QYGGTVYVKE GEVVPIGKKL ADWDLYTVPI VAEASGTVSY
ADMIEGVSYN EVHDESTGIL NRMVVDWRQA ESSSGLRPRV EILDESGSVA KCQYSKDAVY
LLPLGAILNV SNGDVVKAGD VIAKITKEST TTRDITGGLP RVIELFEARK AKVNAVISEI
DGYVEFAKDY YKSKRKVIVR SREDKERIYE YLVPKGRHLI VSEGDFIRRG EPLMDGDPDL
HEILRVLGLE ALAEYMISEI QRVYRLQGVK INNKHIEVII RKMLQKVEIT DAGDTTFLIG
EQIDKSRVER INEVMASQGL RCCSYVPVLL GITRASLQTE SFISAASFQE TTKVLTEAAV
AGKVDRLRGL KENIIAGRLL PVGAGYFIDK LKREFTGERQ GKQVSVGVGG DLTST
|
|---|
| |