| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0556 |
|---|
| Symbol | rluC |
|---|
| ID | 3931346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | - |
|---|
| Start bp | 483642 |
|---|
| End bp | 484559 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637900712 |
|---|
| Product | ribosomal large subunit pseudouridine synthase C |
|---|
| Protein accession | YP_506438 |
|---|
| Protein GI | 88608500 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAAGTT TTATTGTCGA AAATGACTGC CGACGATTAG ATAAATATCT GAGAGATACG
TTTGGTCAGT TTCCTCAGTC TGCACTTCAA AAGGCACTGA GAAAGAAAGC AGTGAGGCTT
AATAATTCTG TGGTTAAGGC TTCTGCTGCT GTTTTAAAAG GTGATTCATT GACTCTTAGT
GCCAATTTTC TCCAAATTCT ATCTTCACCC AGAGAGATAC CGAGTGATAG CTCAAAGGTA
GTTGATAGTA AGTTTGTCGA GTTTATTGCG TCACTCATGT TATACGAGGA CGAAAATGTC
TTAGCCATTA GTAAGCCATT TGGATTTCCT GTTCAGTCGG GTTACGGCAT TACAGCAAGC
ATAGATAATG CAATGAAGTC TATCAATCCT GAATATCGTG TTGTTCACAG GCTTGATAAA
CATACTACTG GCGTACTTAT CTTTGCAAAG ACGCTGGATG CGGCTAGAGA GTTGTGGCGA
CTGTTCTCGA ACAGGCTCGT CAAAAAAAGC TACCTTGCTA TAGTGATTGG AGAGTTGAAA
GAAAAAAAGG GGGTAGTTGA TTGTTACATA AACAAAGTCC TTTTTAAGGG TGAAGAAGTA
ATGCAGTGCA ACAATATCGG CAATGGTGAA CATGCTATTA CACAGTTTCA CGTTATCAAG
AAATTCAAAA ATACATCACT AATTGAACTC TTTCCTTTAA CTGGAAGAAA ACACCAGATT
AGAAGCCAGA TGGCAAGTAT TGGGCATCCG GTATTAAATG ATGGAAAATA TGGAAGAAGA
AAAGCATTTT TAGAATGGTC CGTGAATAAG AAATTATGCT TGCACGCATG CGAAATAGAG
TTTGAACTTT TTGGAAAAGT GATAAAAGTC ACCGCGGAGC TACCAGTTCA CTTTGCCGAA
AATCTCGCGA TAATGTGA
|
|---|
| Protein sequence | MRSFIVENDC RRLDKYLRDT FGQFPQSALQ KALRKKAVRL NNSVVKASAA VLKGDSLTLS
ANFLQILSSP REIPSDSSKV VDSKFVEFIA SLMLYEDENV LAISKPFGFP VQSGYGITAS
IDNAMKSINP EYRVVHRLDK HTTGVLIFAK TLDAARELWR LFSNRLVKKS YLAIVIGELK
EKKGVVDCYI NKVLFKGEEV MQCNNIGNGE HAITQFHVIK KFKNTSLIEL FPLTGRKHQI
RSQMASIGHP VLNDGKYGRR KAFLEWSVNK KLCLHACEIE FELFGKVIKV TAELPVHFAE
NLAIM
|
|---|
| |