| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0500 |
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| Symbol | ligA |
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| ID | 3931734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | - |
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| Start bp | 420546 |
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| End bp | 422558 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637900656 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_506384 |
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| Protein GI | 88608555 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.147098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGCAA AGAAGGAAAT TCAAGAGCTT TACGAGAAGC TCCTACGACA CAATAAGAAG
TACTATCAAG ATGATAGTCC AGAGATAACA GATGCTGAAT ATGACTCGAT TAAGGACCGT
TACCTTAAGC TTCTGGAAGC AAATCCGAGT CTAGGCTTTC CGGTAGTTGT TGGCTACCCT
GCTTCTGAGA AGTTTCAAAA AGTCAAACAC CTGTCTCCTA TGCTTTCATT ACGCAACATC
TTCTCGGAAG AAGAACTGGT AGAGTATATC GAAAAAACAA AAAGATTCCT TAATCTGAAA
AGTGCACTTG AATTCCTGTG TGAACCCAAA ATAGATGGTG TGTCATTTTC TGCACGTTAT
GTCAACGGAA AACTAGTCTC TTGTGCAACA AGAGGAGATG GGAAAATAGG AGAAAACATT
ATTGATAACA TGAAAGTTAT CAATGGTTTC CCCATAGAAA TTATGGATGT ACCAGATCTT
TTGGAAGTAC GTGGAGAAGT TTTCCTTGAC CATGATACTT TTCAAACTCT TGAAGGCTTT
TCAAATCCTC GGAATGCTGC TGCGGGGTCG CTTAGGCAAC TTAATCCTGA AATAACAAAT
GAACGCAATC TGCAATACTT CGCTTATAGC GCGAGCAAAA TCGATGGAAT AGAACATCAA
GAAGATGTGT TACACTTTCT CAGTGGGCGT GGTTTTATGA CAAATCCGTT GAGACTAGCT
TCGTCAAAAG TTCCTGAAAT CATGAGCTTT TACGATTCTG TTTATCGTAG ACGCTCGCAA
ATCAAGTACG ATATAGATGG GCTGGTCTAC AAGGTGAATG ATCTCAAGTT ACATGCGAGG
CTGGGTACAC TATCAGATGC ACCTAGATGG GCCATAGCGC ATAAATTTCC CTCACATCGA
GCAAAGACTA TACTTGAAAA AATTAAGCTC AGCGTTGGGC GTACAGGTAT CATCACGCCA
GTTGCTCACT TAAAACCAAT TACCATAGGC GGAGTCGTTA TATCAAGGGC GAGCTTATAT
AACGAAGACG AACTAGAGAG AAAAGATATC CGCGAAGGAG ATCTGGTAAT AGTAGAAAGA
GCTGGAGATG TAATTCCAAA AGTGCTTGAA GTAGACATCT CGTATAGAAC TAATCAGGAG
AGGTTTATCT TTCCTGATAA ATGTCCATCC TGTTCTTCTA CACTGATAAG AAAAAATAAC
GAAGCGGCGA CTCGATGCAA TAATAGCAAA AAATGCCCCG AACAGGTAAT ACAACAAATA
AAACATCTTG TCTCAGCGCA AGCGTTCGAT ATAGATGGTA TTGGGACATC ACACATCTCT
TTTTTTATTG AGAAGGGATT TATTTCAGAA CCAGCAGATA TTTTTCGCTT AGATAAGCAC
AGAGATGAGA TCAAAAAATA TGATGGTTGG GGAGAGAAAT CAGTAGAGAA TATTCTTAAA
AATATTAAAA ACTCTCGGAA AATAAGTTTG GAAAAATTTA TTTTTAGCCT TGGAATAAAA
AATATAGGCG AAAAGACTGC TTACATGCTT GCACAACAGT TCAAAAGTTT TGCCAACTGG
TTTGACAAAA TGTCCATGCT CAAAGACGAT ACTCAAACTG AGGATGAAAT TAGGAATCTC
GATGGTATGG GAAGTTGTAT CTGTGAATCT TTACTGGATT TTTTCAGTGA TTCAGATAAT
TGCAATATGG TAAAAAGTTT ATCCAATCAC GTCATGATTA CTGATCACAC TGTTAATATA
GGTGGCTCAC TTAGCGGGAA AAAATTCGTT TTTACAGGCA CGCTTCTCTC AATTACTAGA
GAAGAAGCAA AAGAGATCAT AAAAAAAGCC GGTGGTATAG TTGTGAACAG TATTTCTAAG
CAAATCGACT ACGTTGTAGC TGGAGAAAAA GCGGGCTCAA AACTTGCAAA AGCCAATGAG
CTTGGTATTG CAATCATAGA AGAAAAAACC CTCATAGAAT TCACAAATGG GAACAACACA
CCTGCTCTTA AGAAAGAGAC AAGCTCCAAC TAA
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| Protein sequence | MEAKKEIQEL YEKLLRHNKK YYQDDSPEIT DAEYDSIKDR YLKLLEANPS LGFPVVVGYP
ASEKFQKVKH LSPMLSLRNI FSEEELVEYI EKTKRFLNLK SALEFLCEPK IDGVSFSARY
VNGKLVSCAT RGDGKIGENI IDNMKVINGF PIEIMDVPDL LEVRGEVFLD HDTFQTLEGF
SNPRNAAAGS LRQLNPEITN ERNLQYFAYS ASKIDGIEHQ EDVLHFLSGR GFMTNPLRLA
SSKVPEIMSF YDSVYRRRSQ IKYDIDGLVY KVNDLKLHAR LGTLSDAPRW AIAHKFPSHR
AKTILEKIKL SVGRTGIITP VAHLKPITIG GVVISRASLY NEDELERKDI REGDLVIVER
AGDVIPKVLE VDISYRTNQE RFIFPDKCPS CSSTLIRKNN EAATRCNNSK KCPEQVIQQI
KHLVSAQAFD IDGIGTSHIS FFIEKGFISE PADIFRLDKH RDEIKKYDGW GEKSVENILK
NIKNSRKISL EKFIFSLGIK NIGEKTAYML AQQFKSFANW FDKMSMLKDD TQTEDEIRNL
DGMGSCICES LLDFFSDSDN CNMVKSLSNH VMITDHTVNI GGSLSGKKFV FTGTLLSITR
EEAKEIIKKA GGIVVNSISK QIDYVVAGEK AGSKLAKANE LGIAIIEEKT LIEFTNGNNT
PALKKETSSN
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